Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003439`

染色体: Chr04 坐标: 50926055-50929599 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003439`
名称	SmilChr04G003439
描述	uncharacterized SmilChr04G003439
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	50926055 - 50929599 / `-`

ID 对照

NCBI Gene ID	`LOC131020334`
GeneID	`131020334`
locus_tag	`-`
NCBI Name	`LOC131020334`
原始查询	`LOC131020334`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transferases, transferring hexosyl groups [Source:NCBI gene (formerly Entrezgene);Acc:837736]; symbol=AT1G11880; hit=AT1G11880; species=arabidopsis; confidence=high
产物	transferases, transferring hexosyl groups [Source:NCBI gene (formerly Entrezgene);Acc:837736]; symbol=AT1G11880; hit=AT1G11880; species=arabidopsis; confidence=high
Arabidopsis	`AT1G11880` (AT1G11880) transferases, transferring hexosyl groups [Source:NCBI gene (formerly Entrezgene);Acc:837736] identity=57.6; qcov=0.965; evalue=0; confidence=high
Rice	`Os12g0498700` - identity=53.3; qcov=0.917; evalue=3.51e-155; confidence=high
GO	GO:0000009 (alpha-1,6-mannosyltransferase activity); GO:0004376 (GPI mannosyltransferase activity); GO:0005789 (endoplasmic reticulum membrane); GO:0006506 (GPI anchor biosynthetic process); GO:0031501 (mannosyltransferase complex)
KEGG	smil00563 (Glycosylphosphatidylinositol (GPI)-anchor biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF04188 (Mannosyl_trans2)
InterPro	-
eggNOG	-
NR	GeneID:131020334

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057805055.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057805055.1`
3	Nucleus	细胞核	0.00000	`XP_057805055.1`
4	Chromosome	染色体	0.00000	`XP_057805055.1`
5	Centromere	着丝粒	0.00000	`XP_057805055.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:50926266`	`TTC`	`T`	2bp_deletion	frameshift_variant	9	B132,B34,B67,B68,C24,C78,C84,C85,D1
`Chr4:50926269`	`C`	`CAA`	2bp_insertion	frameshift_variant	9	B132,B34,B67,B68,C24,C78,C84,C85,D1
`Chr4:50926726`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B114,B64,C40
`Chr4:50926998`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr4:50927024`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B119,B121,B26
`Chr4:50927081`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A6,B76,C16,C70,D5
`Chr4:50927092`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C70
`Chr4:50928144`	`GC`	`G`	1bp_deletion	frameshift_variant	181	A10,A11,A14,A15,A16,A18,A19,A23,A24,A3,A4,A5,A6,A8,A9,B10,B100,B103,B104,B105,B108,B11,B111,B115,B119,B12,B120,B121,B123,B125,B126,B128,B129,B130,B131,B132,B133,B134,B137,B138,B16,B17,B19,B2,B20,B21,B24,B26,B28,B29,B3,B31,B32,B33,B34,B35,B36,B37,B4,B40,B42,B43,B44,B45,B46,B47,B48,B49,B50,B51,B52,B53,B54,B55,B57,B59,B6,B61,B63,B64,B67,B68,B7,B70,B71,B72,B73,B75,B76,B77,B78,B8,B81,B82,B83,B86,B87,B88,B89,B90,B91,B92,B94,B95,B97,B99,C11,C12,C13,C14,C15,C16,C18,C19,C2,C21,C22,C24,C25,C26,C28,C29,C3,C30,C31,C32,C34,C35,C36,C37,C39,C4,C40,C41,C43,C44,C45,C46,C47,C48,C5,C50,C51,C52,C53,C55,C56,C57,C6,C61,C63,C64,C66,C68,C69,C7,C71,C72,C73,C74,C75,C77,C78,C79,C8,C80,C81,C82,C84,C85,C87,C9,D1,D11,D2,D3,D4,D5,D6,D7,D9
`Chr4:50928188`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A7
`Chr4:50928234`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B108,B9,C15,C51,C77
`Chr4:50928272`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B119,B121,B26
`Chr4:50929372`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A23,A24,C20,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805055.1

509 aa

254

509

Mannosyl_trans2

PF04188 Mannosyl_trans2 21-509 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805055.1`	Pfam	`PF04188`	Mannosyl_trans2	Family	21	509	2.6e-143	479.3	Mannosyltransferase (PIG-V)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057949072.1
TAGGTAAAAGTAAAATATTCTTTTTAGGCTTTTTATCTAACTTTTTAAAAATAAAATTGAGTTTTATTAATTTTTGGTTAAATAAGAAATCAGTATTACTAGGTATAAACATTTTTCAGCGAGATGAGTCTTAAATCCGTCGCCGGCAGAGCCTCCGGCCACCGCCTGGGTCCTCTCACGCGCCGCCTCCTCCGCTACGCAGTCGGCTCTAGAGTTCTAGTGCTGGCCCTAATTATAATCTGGCGGTCTCTTCTCAGCCC...

CDS

1 records

下载 CDS FASTA

LOC131020334
ATGAGTCTTAAATCCGTCGCCGGCAGAGCCTCCGGCCACCGCCTGGGTCCTCTCACGCGCCGCCTCCTCCGCTACGCAGTCGGCTCTAGAGTTCTAGTGCTGGCCCTAATTATAATCTGGCGGTCTCTTCTCAGCCCCTACGACACATCCGCTTCAATAAATCCGCCATGCCTCTCCGCCACCAATTCGTCTAGTCCTCCGCCATCGGTTCTCCTGCCGCGCGTCGGATCGGCGATTGAGCGCAGCATCGTGTGGGATGG...

Protein

1 records

下载 Protein FASTA

XP_057805055.1
MSLKSVAGRASGHRLGPLTRRLLRYAVGSRVLVLALIIIWRSLLSPYDTSASINPPCLSATNSSSPPPSVLLPRVGSAIERSIVWDGVYFTRIAECGYEYEQTYAFLPLLPICVTIFSKSVFAPLVPLIGYRAVLGLSGYVISNVAFVFAAFYLYRISVIVLKDEEVSLRAAILFCFNPASIFYSSVYSESLFAVLSIGGLYHFMNGKYNYATLWLALSGCARSNGVLNAGYICYHAMQQLNDAFSSRKALLWLIVKILL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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