Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003447`

染色体: Chr04 坐标: 50978497-50980882 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003447`
名称	SmilChr04G003447
描述	UDP-glucose 6-dehydrogenase 4-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	50978497 - 50980882 / `-`

ID 对照

NCBI Gene ID	`LOC131020341`
GeneID	`131020341`
locus_tag	`-`
NCBI Name	`LOC131020341`
原始查询	`LOC131020341`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	UDP-glucose 6-dehydrogenase 4-like
产物	UDP-glucose 6-dehydrogenase 4-like
Arabidopsis	`AT3G29360` (UGD2) UDP-glucose 6-dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:822594] identity=83.4; qcov=1; evalue=0; confidence=high
Rice	`Os03g0757900` (UGD3) - identity=85.2; qcov=1; evalue=0; confidence=high
GO	GO:0003979 (UDP-glucose 6-dehydrogenase activity); GO:0005634 (nucleus); GO:0005829 (cytosol); GO:0006024 (glycosaminoglycan biosynthetic process); GO:0051287 (NAD binding)
KEGG	smil00040 (Pentose and glucuronate interconversions - Salvia miltiorrhiza (redroot sage)); smil00053 (Ascorbate and aldarate metabolism - Salvia miltiorrhiza (redroot sage)); smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil00541 (Biosynthesis of various nucleotide sugars - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage)); smil01250 (Biosynthesis of nucleotide sugars - Salvia miltiorrhiza (redroot sage))
Pfam	PF00984 (UDPG_MGDP_dh); PF03720 (UDPG_MGDP_dh_C); PF03721 (UDPG_MGDP_dh_N)
InterPro	-
eggNOG	-
NR	GeneID:131020341

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057805073.1`
2	Cytoplasm	细胞质	0.80000	`XP_057805073.1`
3	Nucleus	细胞核	0.00000	`XP_057805073.1`
4	Chromosome	染色体	0.00000	`XP_057805073.1`
5	Centromere	着丝粒	0.00000	`XP_057805073.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:50978915`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B135
`Chr4:50978938`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr4:50978962`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B125,B90,B92,C87
`Chr4:50978974`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr4:50978992`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B10,B75,C74,D8
`Chr4:50979169`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B31,C2,C56
`Chr4:50979229`	`G`	`GCC`	2bp_insertion	frameshift_variant	180	A1,A13,A14,A15,A16,A18,A2,A23,A24,A25,A3,A4,A7,A8,A9,B1,B10,B100,B102,B103,B104,B105,B107,B109,B11,B110,B111,B113,B115,B117,B118,B119,B120,B121,B122,B123,B124,B125,B128,B129,B13,B131,B132,B133,B135,B137,B138,B139,B14,B16,B18,B19,B21,B22,B24,B26,B27,B28,B3,B30,B31,B32,B33,B35,B36,B38,B39,B4,B41,B45,B46,B47,B48,B5,B50,B51,B53,B54,B59,B6,B60,B61,B64,B65,B66,B7,B70,B71,B72,B73,B75,B76,B78,B79,B8,B82,B83,B84,B86,B87,B88,B9,B90,B91,B92,B94,B95,B97,B99,C11,C14,C16,C18,C19,C20,C21,C22,C23,C25,C26,C27,C29,C3,C30,C31,C32,C34,C35,C36,C37,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C50,C52,C53,C54,C55,C56,C57,C58,C59,C60,C61,C63,C65,C68,C69,C7,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C81,C82,C83,C86,C87,C9,D11,D2,D3,D4,D7,D9
`Chr4:50979372`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A22,B89,C83
`Chr4:50979550`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr4:50979579`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A8
`Chr4:50979679`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:50979729`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C70

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805073.1

481 aa

240

481

UDPG_MGDP_dh_N

UDPG_MGDP_dh

UDPG_MGDP_dh_C

PF03721 UDPG_MGDP_dh_N 3-198 aa PF00984 UDPG_MGDP_dh 210-304 aa PF03720 UDPG_MGDP_dh_C 328-452 aa

XP_057805074.1

481 aa

240

481

UDPG_MGDP_dh_N

UDPG_MGDP_dh

UDPG_MGDP_dh_C

PF03721 UDPG_MGDP_dh_N 3-198 aa PF00984 UDPG_MGDP_dh 210-304 aa PF03720 UDPG_MGDP_dh_C 328-452 aa

XP_057805075.1

481 aa

240

481

UDPG_MGDP_dh_N

UDPG_MGDP_dh

UDPG_MGDP_dh_C

PF03721 UDPG_MGDP_dh_N 3-198 aa PF00984 UDPG_MGDP_dh 210-304 aa PF03720 UDPG_MGDP_dh_C 328-452 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805073.1`	Pfam	`PF03721`	UDPG_MGDP_dh_N	Domain	3	198	3.6e-66	223.2	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
`XP_057805073.1`	Pfam	`PF00984`	UDPG_MGDP_dh	Domain	210	304	7.5e-32	110.0	UDP-glucose/GDP-mannose dehydrogenase family, central domain
`XP_057805073.1`	Pfam	`PF03720`	UDPG_MGDP_dh_C	Domain	328	452	2.2e-30	105.8	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
`XP_057805074.1`	Pfam	`PF03721`	UDPG_MGDP_dh_N	Domain	3	198	3.6e-66	223.2	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
`XP_057805074.1`	Pfam	`PF00984`	UDPG_MGDP_dh	Domain	210	304	7.5e-32	110.0	UDP-glucose/GDP-mannose dehydrogenase family, central domain
`XP_057805074.1`	Pfam	`PF03720`	UDPG_MGDP_dh_C	Domain	328	452	2.2e-30	105.8	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
`XP_057805075.1`	Pfam	`PF03721`	UDPG_MGDP_dh_N	Domain	3	198	3.6e-66	223.2	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
`XP_057805075.1`	Pfam	`PF00984`	UDPG_MGDP_dh	Domain	210	304	7.5e-32	110.0	UDP-glucose/GDP-mannose dehydrogenase family, central domain
`XP_057805075.1`	Pfam	`PF03720`	UDPG_MGDP_dh_C	Domain	328	452	2.2e-30	105.8	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057949091.1
AGGCACAGCCCTGTAAACGTGTTGAACGTTTGATATGCGTTTTTATTCCCACAAATTGCAAGAAATCTTGCTTTTGTCACTTTGCTTAGTTTGTGGGTGTTGTTTTCAGATCTCGGGCTACTCCCCATGCCATCACTATATATACATATTTCTTTTCACAAACTTATAGCCCCACCCATCTCTTCTTCCTTTCTCAGTTCAGTATAAATTAAAGATGGTGAAGATCTGTTGCATCGGTGCGGGGTACGTGGGCGGGCCGA...

XM_057949092.1
AGGCACAGCCCTGTAAACGTGTTGAACGTTTGATATGCGTTTTTATTCCCACAAATTGCAAGAAATCTTGCTTTTGTCACTTTGCTTAGTTTGTGGGTGTTGTTTTCAGATCTCGGGCTACTCCCCATGCCATCACTATATATACATATTTCTTTTCACAAACTTATAGCCCCACCCATCTCTTCTTCCTTTCTCAGTTCAGTTGCAGTATAAATTAAAGATGGTGAAGATCTGTTGCATCGGTGCGGGGTACGTGGGCG...

CDS

3 records

下载 CDS FASTA

LOC131020341
ATGGTGAAGATCTGTTGCATCGGTGCGGGGTACGTGGGCGGGCCGACGATGGCGGTGATCGCGGTGAAGTGCCCTTCCATCGAGGTAGCCGTGGTGGACATCTCCGTCAGCCGCATCCAAGCTTGGAACAGCAAGCAGCTGCCCATTTACGAGCCCGGCCTCGACGACGTCGTGAAGCAATGCCGAGGCAAGAACCTCTTCTTCAGCACCGACGTCGAGCGCCACGTCGCCGAGGCCGACATCGTCTTCGTCTCCGTCAA...

Protein

3 records

下载 Protein FASTA

XP_057805073.1
MVKICCIGAGYVGGPTMAVIAVKCPSIEVAVVDISVSRIQAWNSKQLPIYEPGLDDVVKQCRGKNLFFSTDVERHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIERILTHNSKGINYQILSNPEFLAEGTAVQDLFNPDRVLIGGRETPEGRKAVDALKSVYAHWVPEEKILCTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVAQVAHAVGTDSRIGPK...

XP_057805074.1
MVKICCIGAGYVGGPTMAVIAVKCPSIEVAVVDISVSRIQAWNSKQLPIYEPGLDDVVKQCRGKNLFFSTDVERHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIERILTHNSKGINYQILSNPEFLAEGTAVQDLFNPDRVLIGGRETPEGRKAVDALKSVYAHWVPEEKILCTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVAQVAHAVGTDSRIGPK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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