Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003462`

染色体: Chr04 坐标: 51095328-51104879 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003462`
名称	SmilChr04G003462
描述	protein LEO1 homolog
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	51095328 - 51104879 / `+`

ID 对照

NCBI Gene ID	`LOC131020360`
GeneID	`131020360`
locus_tag	`-`
NCBI Name	`LOC131020360`
原始查询	`LOC131020360`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein LEO1 homolog
产物	protein LEO1 homolog
Arabidopsis	`AT5G61150` (VIP4) leo1-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:836236] identity=36.9; qcov=0.76; evalue=2.82e-31; confidence=medium
Rice	`Os07g0109600` - identity=43.4; qcov=0.514; evalue=1.01e-32; confidence=medium
GO	GO:0005634 (nucleus); GO:0006368 (transcription elongation by RNA polymerase II); GO:0016570 (GO:0016570); GO:0016593 (Cdc73/Paf1 complex); GO:0032968 (positive regulation of transcription elongation by RNA polymerase II); GO:1990269 (RNA polymerase II C-terminal domain phosphoserine binding)
KEGG	-
Pfam	PF04004 (Leo1)
InterPro	-
eggNOG	-
NR	GeneID:131020360

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057805108.1`
2	Chromosome	染色体	0.00000	`XP_057805108.1`
3	Centromere	着丝粒	0.00000	`XP_057805108.1`
4	Chromatin	染色质	0.00000	`XP_057805108.1`
5	Telomere	端粒	0.00000	`XP_057805108.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:51101568`	`A`	`AG`	1bp_insertion	frameshift_variant	13	A1,B139,B59,B86,B9,B94,C18,C27,C60,C77,C83,C86,D11
`Chr4:51101570`	`GA`	`G`	1bp_deletion	frameshift_variant	13	A1,B139,B59,B86,B9,B94,C18,C27,C60,C77,C83,C86,D11
`Chr4:51101624`	`GA`	`G`	1bp_deletion	frameshift_variant	23	A20,B126,B135,B136,B18,B38,B39,B58,B62,B69,B80,B81,B95,C13,C30,C38,C43,C6,C71,C73,C80,C86,D10
`Chr4:51101633`	`GA`	`G`	1bp_deletion	frameshift_variant	25	A15,B117,B120,B128,B137,B16,B21,B31,B32,B33,B50,B54,B7,B82,B87,B88,B99,C2,C22,C25,C27,C3,C34,C36,C56
`Chr4:51101636`	`GA`	`G`	1bp_deletion	frameshift_variant	35	A1,A13,A14,A25,A5,B100,B110,B114,B121,B129,B130,B138,B139,B140,B15,B28,B36,B37,B48,B55,B59,B86,B89,B91,B94,C18,C26,C42,C55,C60,C64,C66,C83,C84,D4
`Chr4:51101639`	`GA`	`G`	1bp_deletion	frameshift_variant	68	A22,A3,B10,B102,B106,B108,B109,B112,B113,B117,B122,B124,B125,B132,B14,B19,B20,B29,B3,B34,B42,B43,B44,B46,B52,B6,B61,B63,B66,B67,B68,B70,B75,B76,B78,B79,B84,B85,B9,B90,C11,C12,C14,C20,C21,C23,C29,C32,C37,C40,C45,C48,C51,C53,C54,C59,C63,C67,C68,C69,C7,C79,C8,C81,C87,D2,D3,D7
`Chr4:51101642`	`GA`	`G`	1bp_deletion	frameshift_variant	64	A10,A18,A19,A24,A4,A7,A8,A9,B101,B105,B107,B11,B111,B115,B22,B23,B30,B35,B4,B40,B41,B45,B47,B49,B53,B56,B64,B71,B72,B73,B8,B83,B92,B93,B96,B97,C1,C10,C16,C19,C24,C31,C35,C39,C44,C47,C49,C5,C50,C52,C61,C62,C65,C70,C74,C75,C76,C77,C78,C82,C85,C9,D3,D5
`Chr4:51103250`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:51103262`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B124,C33
`Chr4:51103818`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C51
`Chr4:51103880`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A2,C42
`Chr4:51104323`	`GA`	`G`	1bp_deletion	frameshift_variant	1	C40

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805108.1

296 aa

148

296

Leo1

PF04004 Leo1 101-259 aa

XP_057805109.1

296 aa

148

296

Leo1

PF04004 Leo1 101-259 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805108.1`	Pfam	`PF04004`	Leo1	Family	101	259	2.4e-24	86.8	Leo1-like protein
`XP_057805109.1`	Pfam	`PF04004`	Leo1	Family	101	259	2.4e-24	86.8	Leo1-like protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057949125.1
TTTTTTTTTTTTCCTGTGCTTATTTTTCCTAATGAACCAAAAATTTAACTCAAGGGCACGCCAAATGAGAATATAAATAGGTTTGCCCTAAAACATGTCATATAAATTCACCTGAAGCTGCAAACAATAGAGAATTGGTCCTTGCCTCAACATCAACTTCTACTCATCAAACCTTCCTTTTTGCAGGTCTCGTCTGAAAAATATGTGAGGGGAAACCCTCTTTTCATGTGCAAGTTCTAGCTCCCCTCAACTTTATTCGC...

XM_057949126.1
TTTTTTTTTTTTCCTGTGCTTATTTTTCCTAATGAACCAAAAATTTAACTCAAGGGCACGCCAAATGAGAATATAAATAGGTTTGCCCTAAAACATGTCATATAAATTCACCTGAAGCTGCAAACAATAGAGAATTGGTCCTTGCCTCAACATCAACTTCTACTCATCAAACCTTCCTTTTTGCAGGTCTCGTCTGAAAAATATGTGAGGGGAAACCCTCTTTTCATGTGCAAGTTCTAGCTCCCCTCAACTTTATTCGC...

CDS

2 records

下载 CDS FASTA

LOC131020360
ATGACGAGCCAGCACAATATGGACTTGAGTATGACACTGATCAAGGCAAAAAGAATTCTTTATCTCCTGAACACAAAATATATTGCGAGAGTGATCTGGAGTCTGAAGGATATTGTATCATGTGAACATACACATTTTGTGCCTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGGCTGAGGATAAACTAGAGGGGCAGTCAATCTGCAGGATGCTGGTGCTGGAGTTTCCAAA...

Protein

2 records

下载 Protein FASTA

XP_057805108.1
MTSQHNMDLSMTLIKAKRILYLLNTKYIARVIWSLKDIVSCEHTHFVPEEEEEEEEEEEEEEEEEEKAEDKLEGQSICRMLVLEFPKRTPLADPSQMATSELPNIIGFDDKPFDPTTYVEEDFYIIDASGSERLLPPTNIIQWRNVVNLDGTTSVESNGRIVNWSDGSLQLFIGNKAFDVTEEDTKQILSHALLWNEGIYKSLARISKSEKVSSSSLVPDPDSLTVLVDQDTRPVPETEQLQQDNLKITEDDPSRNQKNK...

XP_057805109.1
MTSQHNMDLSMTLIKAKRILYLLNTKYIARVIWSLKDIVSCEHTHFVPEEEEEEEEEEEEEEEEEEKAEDKLEGQSICRMLVLEFPKRTPLADPSQMATSELPNIIGFDDKPFDPTTYVEEDFYIIDASGSERLLPPTNIIQWRNVVNLDGTTSVESNGRIVNWSDGSLQLFIGNKAFDVTEEDTKQILSHALLWNEGIYKSLARISKSEKVSSSSLVPDPDSLTVLVDQDTRPVPETEQLQQDNLKITEDDPSRNQKNK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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