Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G003475

染色体: Chr04 坐标: 51220171-51221727 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G003475
名称SmilChr04G003475
描述stress response protein NST1-like
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向51220171 - 51221727 / -

ID 对照

NCBI Gene IDLOC131020369
GeneID131020369
locus_tag-
NCBI NameLOC131020369
原始查询LOC131020369

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述stress response protein NST1-like
产物stress response protein NST1-like
Arabidopsis-
-
RiceOs12g0271600 (BIP134)
-
identity=29.7; qcov=0.309; evalue=1.95e-06; confidence=low
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131020369

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 0.80000 XP_057805118.1
2 Cytosol 细胞质基质 0.60000 XP_057805118.1
3 Cytoplasm 细胞质 0.20000 XP_057805118.1
4 Nucleus 细胞核 0.00000 XP_057805118.1
5 Chromosome 染色体 0.00000 XP_057805118.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:51220394 G A EMS_canonical_SNV CDS_variant 1 C75
Chr4:51220818 C T EMS_canonical_SNV CDS_variant 5 B139,B61,B83,B89,C4
Chr4:51220823 G GGA 2bp_insertion frameshift_variant 2 B83,B89
Chr4:51220823 G GGA 2bp_insertion CDS_variant 2 B83,B89
Chr4:51221226 C T EMS_canonical_SNV CDS_variant 4 B98,C18,C22,C44
Chr4:51221232 CA C 1bp_deletion frameshift_variant 123 A1,A10,A13,A14,A15,A16,A18,A19,A2,A3,A4,A9,B1,B10,B100,B101,B103,B105,B107,B108,B109,B11,B110,B112,B114,B115,B118,B120,B127,B130,B131,B136,B137,B138,B139,B18,B2,B20,B21,B23,B24,B25,B27,B28,B3,B30,B31,B34,B35,B38,B39,B40,B42,B43,B44,B45,B46,B47,B50,B51,B53,B54,B59,B63,B64,B66,B7,B70,B71,B74,B75,B78,B8,B85,B86,B87,B91,B94,B99,C10,C12,C15,C16,C18,C19,C21,C26,C27,C30,C31,C35,C36,C37,C38,C39,C40,C41,C42,C45,C46,C47,C48,C49,C50,C53,C55,C56,C58,C60,C61,C64,C66,C70,C72,C73,C74,C78,C83,C86,D11,D3,D4,D5
Chr4:51221235 C CT 1bp_insertion frameshift_variant 98 A1,A10,A13,A14,A16,A18,A19,A2,A3,A4,A9,B1,B10,B103,B105,B107,B108,B109,B11,B110,B112,B114,B115,B118,B130,B136,B137,B138,B139,B18,B2,B21,B23,B25,B27,B28,B3,B30,B31,B34,B35,B38,B39,B42,B43,B44,B45,B46,B47,B50,B51,B53,B54,B64,B66,B7,B70,B75,B8,B85,B86,B91,B94,B99,C10,C12,C15,C16,C18,C19,C21,C27,C30,C31,C36,C37,C38,C39,C40,C45,C46,C48,C49,C50,C53,C55,C58,C60,C64,C66,C72,C73,C78,C83,C86,D11,D4,D5

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057949135.1
AGAGAAGAGGTGGTTTTTGGAGTGATGAATTTTGACAAAATTTGGCACCTCGATTACACAGATCTTGTACTAAATTTCACAACAAACCCTTTCTAATACCTCTCCGTAATCCTCGTAGCTACCTCCTTCTGCATTCTCCTTCATTTTGACAATGGGGGAGATCGATACAAATCCAATTGAATCAGTTCAAAGTGCAATCACTTTTTTCGGACAGAGCAATGAGCAAAGGAAAAACAGTCCAACAAATGACAAAGAAGTGG...
XM_057949136.1
GATTTCCTTTTTGTGTTGGTGGATATAATTAGCAATGGGGGAGATCGATACAAATCCAATTGAATCAGTTCAAAGTGCAATCACTTTTTTCGGACAGAGCAATGAGCAAAGGAAAAACAGTCCAACAAATGACAAAGAAGTGGAGAGGGAGAGAGAGATAGAGAGGCTAGAGAGAGAGTTGGCGGCTGTGAAAGTTCAGGTGGAGGCGAAGGATGCGGCGCACAAGCAAGCACTTGTTAAGCTCGACCATTACCAGAAAA...

CDS

2 records

下载 CDS FASTA
LOC131020369
ATGGGGGAGATCGATACAAATCCAATTGAATCAGTTCAAAGTGCAATCACTTTTTTCGGACAGAGCAATGAGCAAAGGAAAAACAGTCCAACAAATGACAAAGAAGTGGAGAGGGAGAGAGAGATAGAGAGGCTAGAGAGAGAGTTGGCGGCTGTGAAAGTTCAGGTGGAGGCGAAGGATGCGGCGCACAAGCAAGCACTTGTTAAGCTCGACCATTACCAGAAAACTGCAGACGAGCTGTCGACGCTGCTCAAGAACTC...
LOC131020369
ATGGGGGAGATCGATACAAATCCAATTGAATCAGTTCAAAGTGCAATCACTTTTTTCGGACAGAGCAATGAGCAAAGGAAAAACAGTCCAACAAATGACAAAGAAGTGGAGAGGGAGAGAGAGATAGAGAGGCTAGAGAGAGAGTTGGCGGCTGTGAAAGTTCAGGTGGAGGCGAAGGATGCGGCGCACAAGCAAGCACTTGTTAAGCTCGACCATTACCAGAAAACTGCAGACGAGCTGTCGACGCTGCTCAAGAACTC...

Protein

2 records

下载 Protein FASTA
XP_057805118.1
MGEIDTNPIESVQSAITFFGQSNEQRKNSPTNDKEVEREREIERLERELAAVKVQVEAKDAAHKQALVKLDHYQKTADELSTLLKNSDAKKNFYIKQSEEAISRVVELESVLTAKEAEKLELEEQIEEKSAYIESLQLAMEKAKEALMSCEIELNMLKDEAAYTNDVEAEVESVKRELEKCREQENEAQVEIALLKFQVHKGRSKLAAAEAAEARAQSEKTALYNALQQMGLEAEETEREKRMLKEAAAKLAHPHPHPPQ...
XP_057805119.1
MGEIDTNPIESVQSAITFFGQSNEQRKNSPTNDKEVEREREIERLERELAAVKVQVEAKDAAHKQALVKLDHYQKTADELSTLLKNSDAKKNFYIKQSEEAISRVVELESVLTAKEAEKLELEEQIEEKSAYIESLQLAMEKAKEALMSCEIELNMLKDEAAYTNDVEAEVESVKRELEKCREQENEAQVEIALLKFQVHKGRSKLAAAEAAEARAQSEKTALYNALQQMGLEAEETEREKRMLKEAAAKLAHPHPHPPQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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