Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003509`

染色体: Chr04 坐标: 51460539-51465605 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003509`
名称	SmilChr04G003509
描述	agamous-like MADS-box protein AGL65
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	51460539 - 51465605 / `-`

ID 对照

NCBI Gene ID	`LOC131020397`
GeneID	`131020397`
locus_tag	`-`
NCBI Name	`LOC131020397`
原始查询	`LOC131020397`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	agamous-like MADS-box protein AGL65
产物	agamous-like MADS-box protein AGL65
Arabidopsis	`AT1G18750` (AGL65) AGAMOUS-like 65 [Source:NCBI gene (formerly Entrezgene);Acc:838457] identity=46.3; qcov=0.729; evalue=5.51e-75; confidence=high
Rice	`Os11g0658700` (MADS68) - identity=41.8; qcov=0.962; evalue=8.06e-83; confidence=medium
GO	GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF00319 (SRF-TF)
InterPro	-
eggNOG	-
NR	GeneID:131020397

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057805154.1`
2	Chromosome	染色体	0.00000	`XP_057805154.1`
3	Centromere	着丝粒	0.00000	`XP_057805154.1`
4	Chromatin	染色质	0.00000	`XP_057805154.1`
5	Telomere	端粒	0.00000	`XP_057805154.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:51462334`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C81
`Chr4:51462563`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr4:51462952`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B120,B68
`Chr4:51463749`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A2,B91,C42
`Chr4:51464702`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr4:51465217`	`A`	`AT`	1bp_insertion	frameshift_variant	8	A7,B101,B126,B4,B55,C20,C23,C5
`Chr4:51465220`	`TA`	`T`	1bp_deletion	frameshift_variant	8	A7,B101,B126,B4,B55,C20,C23,C5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805154.1

406 aa

203

406

SRF-TF

PF00319 SRF-TF 46-88 aa

XP_057805155.1

400 aa

200

400

SRF-TF

PF00319 SRF-TF 46-88 aa

XP_057805156.1

373 aa

186

373

SRF-TF

PF00319 SRF-TF 13-55 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805154.1`	Pfam	`PF00319`	SRF-TF	Domain	46	88	7.6e-18	64.4	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057805155.1`	Pfam	`PF00319`	SRF-TF	Domain	46	88	7.5e-18	64.4	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057805156.1`	Pfam	`PF00319`	SRF-TF	Domain	13	55	6.7e-18	64.6	SRF-type transcription factor (DNA-binding and dimerisation domain)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057949172.1
AGTACAACCTGTTGTCTGCTCCTCAATCCTTCTCCTTAGCCTTTTCTCTCTCACTCTTCCTTTCTCTCTCCTTGCATCTCTTCCTCATTCTCCCTTAAAATCATTATCCTCCTCCTCCTTCTCCTGTTTTCCCTTTTTATTTTCTCGAATCGCTGCAGCTTACATCACATTCACAAATATTATGTCCATTCATCACCTGATTTGGATATCCCATTTTTAGGTCATTTTCCATTTGCATTTTTCTGCATGCTTGTCGCCCT...

XM_057949173.1
ACAACCTGTTGTCTGCTCCTCAATCCTTCTCCTTAGCCTTTTCTCTCTCACTCTTCCTTTCTCTCTCCTTGCATCTCTTCCTCATTCTCCCTTAAAATCATTATCCTCCTCCTCCTTCTCCTGTTTTCCCTTTTTATTTTCTCGAATCGCTGCAGCTTACATCACATTCACAAATATTATGTCCATTCATCACCTGATTTGGATATCCCATTTTTAGGATTATTGCAGGATTTTCTATCTGCAAATTTGCACATGTTTGG...

CDS

3 records

下载 CDS FASTA

LOC131020397
ATGATTCCTATTTTTAACCCCTTGTTTGTGGAAATACAGGATTATTGCAGGATTTTCTATCTGCAAATTTGCACATGTTTGGAGGATTTTACGTCAAGGATGGGAAGGGTAAAGCTGAAGATACAGAGATTAGAGACTCTGAACAGCCGGCAGGTCACGTATGGAAAACGAAGGGCTGGAATCTTGAAAAAGGCCCAAGAAATTTCTGTTTTATGTGACATTCCCATTGTACTTATCATGTTTTCTCCATCTGGGAAGCC...

Protein

3 records

下载 Protein FASTA

XP_057805154.1
MIPIFNPLFVEIQDYCRIFYLQICTCLEDFTSRMGRVKLKIQRLETLNSRQVTYGKRRAGILKKAQEISVLCDIPIVLIMFSPSGKPSIFCGQRSNIDEMIAKYAQLTPKERAKRRLESLETLKRNFKKLDQDVDIEEFLDASTPSIEEMQNRARTLQGQLAEAHKRIIWWSNPDTIEDIEHLNQMENSLRESLNRTQITKEKFFKDPLIQFDCTSQVCGDFGRVYEQELPKPQFPNNMHFPLATTSDQDCPNQSWLPGG...

XP_057805155.1
MIPIFNPLFVEIQDYCRIFYLQICTCLEDFTSRMGRVKLKIQRLETLNSRQVTYGKRRAGILKKAQEISVLCDIPIVLIMFSPSGKPSIFCGQRSNIDEMIAKYAQLTPKERAKRRLESLETLKRNFKKLDQDVDIEEFLDASTPSIEEMQNRARTLQGQLAEAHKRIIWWSNPDTIEDIEHLNQMENSLRESLNRTQITKEKFFKDPLIQFDCTSQVCGDFGRVYEQELPKPQFPNNMHFPLATTSDQDCPNQSWLPGG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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