Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003522`

染色体: Chr04 坐标: 51601697-51603481 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003522`
名称	SmilChr04G003522
描述	geranylgeranyl diphosphate reductase, chloroplastic
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	51601697 - 51603481 / `+`

ID 对照

NCBI Gene ID	`LOC131020407`
GeneID	`131020407`
locus_tag	`-`
NCBI Name	`LOC131020407`
原始查询	`LOC131020407`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	geranylgeranyl diphosphate reductase, chloroplastic
产物	geranylgeranyl diphosphate reductase%2C chloroplastic
Arabidopsis	`AT1G74470` (AT1G74470) Pyridine nucleotide-disulfide oxidoreductase family protein [Source:NCBI gene (formerly Entrezgene);Acc:843788] identity=80.9; qcov=1.01; evalue=0; confidence=high
Rice	`Os02g0744900` (LYL1) - identity=79.8; qcov=0.933; evalue=0; confidence=high
GO	GO:0009535 (chloroplast thylakoid membrane); GO:0015979 (photosynthesis); GO:0015995 (chlorophyll biosynthetic process); GO:0016628 (oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor); GO:0045550 (GO:0045550); GO:0071949 (FAD binding)
KEGG	smil00860 (Porphyrin metabolism - Salvia miltiorrhiza (redroot sage)); smil00900 (Terpenoid backbone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF01134 (GIDA); PF01494 (FAD_binding_3)
InterPro	-
eggNOG	-
NR	GeneID:131020407

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057805166.1`
2	Chloroplast thylakoid	类囊体	0.80000	`XP_057805166.1`
3	Chloroplast membrane	叶绿体膜	0.40000	`XP_057805166.1`
4	Chloroplast stroma	叶绿体基质	0.20000	`XP_057805166.1`
5	Chloroplast thylakoid membrane	类囊体膜	0.20000	`XP_057805166.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:51602004`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr4:51602027`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B112
`Chr4:51602027`	`TC`	`T`	1bp_deletion	CDS_variant	1	B112
`Chr4:51602030`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B112,C55
`Chr4:51602214`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:51602259`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B35,B48,B53,B60,C14
`Chr4:51602505`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B26,B35,B48,B60,C14
`Chr4:51602670`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C27
`Chr4:51602837`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B77
`Chr4:51602837`	`TG`	`T`	1bp_deletion	CDS_variant	1	B77
`Chr4:51602850`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C27
`Chr4:51602884`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B52

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805166.1

462 aa

231

462

FAD_binding_3

GIDA

PF01494 FAD_binding_3 52-84 aa PF01134 GIDA 53-87 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805166.1`	Pfam	`PF01494`	FAD_binding_3	Domain	52	84	1.7e-10	41.4	FAD binding domain
`XP_057805166.1`	Pfam	`PF01134`	GIDA	Family	53	87	9.5e-05	22.3	Glucose inhibited division protein A

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057949183.1
CATTCTGACACTTCAGTAAAGTTATGACTCTAGTCCGTATCCAAATGGGCAACGATACAACCAAAGCAAAAATCTCAGCCATTATCCTCAATCAATCTCCACTGTCCATTCTCTCCATCCTACGCCTCTCCCCTCCCCAAATCCCCCAACCATATCCAACAAAAATCACCATAAAACCTCTCTTACTCTTCACTCTCACCCACTAACCAAAATATCCCACCACCACCATGGCCTCCATAGCCCTCAAAACCTTCGTCGGC...

CDS

1 records

下载 CDS FASTA

LOC131020407
ATGGCCTCCATAGCCCTCAAAACCTTCGTCGGCCTCCGCCAGTCCTCGCCGGAAAACAATGCCATCATTCTTTCCAAGCCCGCCGCCTTGCCCCACCGCAGATTCCGGATAAATGCCTCCAAGTCCAGCCCCAGAGTCACCGGCCGCAACCTCAGAGTGGCCGTGGTCGGCGGTGGCCCTGCCGGCGGCGCCGCCGCCGAGACGCTGGCTAAGGGAGGGATCGAGACGTTCCTGATCGAGAGAAAGATGGACAACTGCAA...

Protein

1 records

下载 Protein FASTA

XP_057805166.1
MASIALKTFVGLRQSSPENNAIILSKPAALPHRRFRINASKSSPRVTGRNLRVAVVGGGPAGGAAAETLAKGGIETFLIERKMDNCKPCGGAIPLCMVGEFDLPLDIIDRRVTKMKMISPSNVAVDIGRTLKPHEYIGMVRREVLDAYLRDRAATAGATVINGLFLKMDLPQAKTAPYVLHYTDYNAKTGGAGEKKTLEVDAIIGADGANSRVAKGINAGDYEYAIAFQERIKIPDEKMKYYEDLAEMYVGDDVSPDFYG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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