Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003535`

染色体: Chr04 坐标: 51714983-51717120 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003535`
名称	SmilChr04G003535
描述	protein MANNAN SYNTHESIS-RELATED 2-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	51714983 - 51717120 / `-`

ID 对照

NCBI Gene ID	`LOC131020418`
GeneID	`131020418`
locus_tag	`-`
NCBI Name	`LOC131020418`
原始查询	`LOC131020418`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein MANNAN SYNTHESIS-RELATED 2-like
产物	protein MANNAN SYNTHESIS-RELATED 2-like
Arabidopsis	`AT1G51630` (MSR2) O-fucosyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:841588] identity=43.3; qcov=1.06; evalue=1.63e-102; confidence=medium
Rice	`Os09g0498800` - identity=38.6; qcov=1.06; evalue=5.92e-86; confidence=medium
GO	-
KEGG	-
Pfam	PF10250 (O-FucT)
InterPro	-
eggNOG	-
NR	GeneID:131020418

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057805180.1`
2	Nucleus	细胞核	0.00000	`XP_057805180.1`
3	Chromosome	染色体	0.00000	`XP_057805180.1`
4	Centromere	着丝粒	0.00000	`XP_057805180.1`
5	Chromatin	染色质	0.00000	`XP_057805180.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:51715177`	`GAC`	`G`	2bp_deletion	frameshift_variant	42	A11,A7,B105,B110,B111,B112,B118,B122,B13,B137,B15,B17,B18,B19,B21,B23,B31,B45,B52,B54,B56,B57,B58,B69,B72,B73,B8,B80,B81,B95,B96,C1,C26,C3,C38,C43,C49,C58,C6,C76,D2,D5
`Chr4:51715280`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B28,B76,C16
`Chr4:51715570`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A2
`Chr4:51715614`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B128,B85
`Chr4:51715671`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B138
`Chr4:51715681`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B128,B85
`Chr4:51715779`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:51715788`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C84
`Chr4:51715811`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr4:51715838`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B10,B75,C73,C74
`Chr4:51715873`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A3
`Chr4:51715883`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805180.1

332 aa

166

332

O-FucT

PF10250 O-FucT 35-293 aa

XP_057805181.1

332 aa

166

332

O-FucT

PF10250 O-FucT 35-293 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805180.1`	Pfam	`PF10250`	O-FucT	Family	35	293	1.7e-26	94.4	GDP-fucose protein O-fucosyltransferase
`XP_057805181.1`	Pfam	`PF10250`	O-FucT	Family	35	293	1.7e-26	94.4	GDP-fucose protein O-fucosyltransferase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057949197.1
CATTGACAAAGCGCAGAAGTCTTGTTTGAGAGGAACCTTATCCGGAACGAACAATTGTGCAATACAACTCTCTCAAAGTGTCTAAACTAACTGGAATCAGTGATGCCCTTTGGAGTCCAAACAATGAAGCCATGCAACCATGCTGGAACAGACCCTCATTTCTATTCAAAGAGAGAAAACAACCCAATAATGGTTACATCTTTTTCACATTGAGTCGTGCACCAGAATATCATGCCACACAGGTAGCAAATGCTGTGGCG...

XM_057949198.1
TTTGTTATTATTCTATTTTTTTCTGCATTTTTAAATAATTACAGATATAACTAAACATCTACTCCTTCAAATTAATCCATAAACCTTTTTCTGTAATATCCAACAATTTCATTTTTCAAATTAACAAACAATAATCTAGATATGGTTTTTGGTAGTTAGTAAATTATTTAACAACGAAACCAAAAGTAGTACATAGTGTATGTCCACTGTAGACTAAAAGTAGAGAAAGAGAAGGGGTAATTTAATTTGTACACTGTGCA...

CDS

2 records

下载 CDS FASTA

LOC131020418
ATGCAACCATGCTGGAACAGACCCTCATTTCTATTCAAAGAGAGAAAACAACCCAATAATGGTTACATCTTTTTCACATTGAGTCGTGCACCAGAATATCATGCCACACAGGTAGCAAATGCTGTGGCGGTGGCCACTCAACTAGGTGCACAACTTGCAATTCCAGACATCCGAGGATCCAATTCTCGACACAAACTGCAGTTTGGCGAAATTTATGATGTGGAGACGTTTGTGAGAAGCCTGAAAGGAGTAGTCCAAGT...

Protein

2 records

下载 Protein FASTA

XP_057805180.1
MQPCWNRPSFLFKERKQPNNGYIFFTLSRAPEYHATQVANAVAVATQLGAQLAIPDIRGSNSRHKLQFGEIYDVETFVRSLKGVVQVDKNPAAQLSNMKLHIVSVPDGVSEDFIASKISPIFRSKRKLKIVTHFNSSKGKLDESSAAYQCIAMFESLKLHPDLQQLVDSMVATLRSFSHKRGHYIAVDLRVDDSLCQASKHCYNVQEIGEFLRKIGVERETSIYLSQTGWSSGLGEFRDVFPNTFTKDAIMAVDQKARFM...

XP_057805181.1
MQPCWNRPSFLFKERKQPNNGYIFFTLSRAPEYHATQVANAVAVATQLGAQLAIPDIRGSNSRHKLQFGEIYDVETFVRSLKGVVQVDKNPAAQLSNMKLHIVSVPDGVSEDFIASKISPIFRSKRKLKIVTHFNSSKGKLDESSAAYQCIAMFESLKLHPDLQQLVDSMVATLRSFSHKRGHYIAVDLRVDDSLCQASKHCYNVQEIGEFLRKIGVERETSIYLSQTGWSSGLGEFRDVFPNTFTKDAIMAVDQKARFM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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