Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003569`

染色体: Chr04 坐标: 52059365-52071242 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003569`
名称	SmilChr04G003569
描述	protein NUCLEOLAR FACTOR 1-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	52059365 - 52071242 / `-`

ID 对照

NCBI Gene ID	`LOC131020448`
GeneID	`131020448`
locus_tag	`-`
NCBI Name	`LOC131020448`
原始查询	`LOC131020448`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein NUCLEOLAR FACTOR 1-like
产物	protein NUCLEOLAR FACTOR 1-like
Arabidopsis	`AT1G17690` (NOF1) U3 small nucleolar RNA-associated protein [Source:NCBI gene (formerly Entrezgene);Acc:838345] identity=54.8; qcov=0.948; evalue=0; confidence=high
Rice	`Os05g0295100` - identity=50.7; qcov=0.817; evalue=0; confidence=high
GO	GO:0000462 (maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)); GO:0005730 (nucleolus); GO:0019843 (rRNA binding); GO:0032040 (small-subunit processome); GO:0034511 (U3 snoRNA binding)
KEGG	-
Pfam	PF06862 (Utp25_C); PF22916 (UTP25_NTPase-like)
InterPro	-
eggNOG	-
NR	GeneID:131020448

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057805235.1`
2	Nucleolus	核仁	1.00000	`XP_057805235.1`
3	Nucleolus rim	Nucleolus rim	0.20000	`XP_057805235.1`
4	Chromosome	染色体	0.00000	`XP_057805235.1`
5	Centromere	着丝粒	0.00000	`XP_057805235.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:52059640`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B130,B63,C12,C53
`Chr4:52059672`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A21,B64,B93,D2
`Chr4:52060265`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B31,C10,D2
`Chr4:52060372`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B122,B28,C75
`Chr4:52060383`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B72,C34,D11
`Chr4:52060414`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B60,B97,C30,C60,D4
`Chr4:52060415`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A21,B64,B93,D2
`Chr4:52061240`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr4:52062589`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B35,C14,C3,C40
`Chr4:52062614`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:52064074`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B34,C70,C72,C8
`Chr4:52065431`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B35,C14,C40

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805235.1

756 aa

378

756

UTP25_NTPase-like

Utp25_C

PF22916 UTP25_NTPase-like 278-567 aa PF06862 Utp25_C 578-755 aa

XP_057805236.1

753 aa

376

753

UTP25_NTPase-like

Utp25_C

PF22916 UTP25_NTPase-like 275-564 aa PF06862 Utp25_C 575-752 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805235.1`	Pfam	`PF22916`	UTP25_NTPase-like	Domain	278	567	5.9e-102	341.4	UTP25, NTP hydrolase-like domain
`XP_057805235.1`	Pfam	`PF06862`	Utp25_C	Domain	578	755	7.1e-58	196.1	Utp25, C-terminal domain
`XP_057805236.1`	Pfam	`PF22916`	UTP25_NTPase-like	Domain	275	564	5.6e-102	341.4	UTP25, NTP hydrolase-like domain
`XP_057805236.1`	Pfam	`PF06862`	Utp25_C	Domain	575	752	7e-58	196.1	Utp25, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057949252.1
AGAAGTAACAAATTCGAAATTTTTACAAAAGAAGAAAATCTAAACCCTAACAAGGTTTAAGAGTCTTTAATCCTTACAAGTTCCTCTCTGCTTTAAAAATCGAAAATCCAGCATATTAGTGTGATTGTTGTTGCCGCGCGTTCTGCTTCTACTATTCTCTGTCATGGGAGCTCCGAAACGACGCCGCAGCTCAAAGGACGAGGAGAAACTCACCGCTAAGCTGAGGAAAACAGGGAAACATGGAGTGCCCGCAGGAAAGT...

XM_057949253.1
CCCTAACAAGGTTTAAGAGTCTTTAATCCTTACAAGTTCCTCTCTGCTTTAAAAATCGAAAATCCAGCATATTAGTGTGATTGTTGTTGCCGCGCGTTCTGCTTCTACTATTCTCTGTCATGGGAGCTCCGAAACGACGCCGCAGCTCAAAGGACGAGGAGAAACTCACCGCTAAGCTGAGGAAAACAGGGAAACATGGAGGAAAGTTACATGAAGAGGAGCAGGTAGATGAACATTTTGAGAGCGAAGGAGCCGAATTG...

CDS

2 records

下载 CDS FASTA

LOC131020448
ATGGGAGCTCCGAAACGACGCCGCAGCTCAAAGGACGAGGAGAAACTCACCGCTAAGCTGAGGAAAACAGGGAAACATGGAGGAAAGTTACATGAAGAGGAGCAGGTAGATGAACATTTTGAGAGCGAAGGAGCCGAATTGGCTGCCAACACAAAGCAGCTGACAGTCTACGATAGTTTATTGAAGAAATTGGGTACACGGAATATTTCTGTTGCAGACGCGCTTAGAAGAAGGCAAAGAGAAGAACAAGGGGAAAGTGA...

LOC131020448
ATGGGAGCTCCGAAACGACGCCGCAGCTCAAAGGACGAGGAGAAACTCACCGCTAAGCTGAGGAAAACAGGGAAACATGGAGTGCCCGCAGGAAAGTTACATGAAGAGGAGCAGGTAGATGAACATTTTGAGAGCGAAGGAGCCGAATTGGCTGCCAACACAAAGCAGCTGACAGTCTACGATAGTTTATTGAAGAAATTGGGTACACGGAATATTTCTGTTGCAGACGCGCTTAGAAGAAGGCAAAGAGAAGAACAAGG...

Protein

2 records

下载 Protein FASTA

XP_057805235.1
MGAPKRRRSSKDEEKLTAKLRKTGKHGVPAGKLHEEEQVDEHFESEGAELAANTKQLTVYDSLLKKLGTRNISVADALRRRQREEQGESDTDEDEDEDEDEDEDEDSDPESIDELEGKADDDEDDDDDGDDSMSPRHDIVGKDKDHVELSEDAGVDDYDATSDSDEEATSVANDQALSDASSVTSNFDNHLSYKLVSTEVDSLLRRKWKYTWKMPAINMSNCHWKGTGECSIKDLETNSLSGLKPRLYKHWLESCKASSS...

XP_057805236.1
MGAPKRRRSSKDEEKLTAKLRKTGKHGGKLHEEEQVDEHFESEGAELAANTKQLTVYDSLLKKLGTRNISVADALRRRQREEQGESDTDEDEDEDEDEDEDEDSDPESIDELEGKADDDEDDDDDGDDSMSPRHDIVGKDKDHVELSEDAGVDDYDATSDSDEEATSVANDQALSDASSVTSNFDNHLSYKLVSTEVDSLLRRKWKYTWKMPAINMSNCHWKGTGECSIKDLETNSLSGLKPRLYKHWLESCKASSSSEC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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