当前解析结果
SmilChr04G003591| 统一新 Gene ID | SmilChr04G003591 |
|---|---|
| 名称 | SmilChr04G003591 |
| 描述 | ABC transporter G family member 22-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 52332121 - 52340299 / - |
| NCBI Gene ID | LOC131020469 |
|---|---|
| GeneID | 131020469 |
| locus_tag | - |
| NCBI Name | LOC131020469 |
| 原始查询 | LOC131020469 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter G family member 22-like |
| 产物 | ABC transporter G family member 22-like |
| Arabidopsis | AT5G06530 (ABCG22)ABC-2 type transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:830541] identity=79.5; qcov=0.993; evalue=0; confidence=high |
| Rice | Os03g0157400 (OsABCG4)- identity=74.7; qcov=0.99; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0140359 (ABC-type transporter activity) |
| KEGG | smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage)); smil04981 (Folate transport and metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00005 (ABC_tran); PF01061 (ABC2_membrane); PF12698 (ABC2_membrane_3); PF19055 (ABC2_membrane_7) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020469 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057805268.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057805268.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057805268.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057805268.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057805268.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:52332793 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B2,B35,B67,C15,C39 |
Chr4:52333209 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B122,C32,C68 |
Chr4:52333263 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C76,D8 |
Chr4:52335015 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr4:52335141 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr4:52335153 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C23 |
Chr4:52335160 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C64 |
Chr4:52335183 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B132,B48,B60,C29 |
Chr4:52335216 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C45,C7,D10 |
Chr4:52335507 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B132,B60,C29 |
Chr4:52335607 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A25,B36,B94 |
Chr4:52336110 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B80 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057805268.1PF00005
ABC_tran 177-326 aa
PF19055
ABC2_membrane_7 355-652 aa
PF01061
ABC2_membrane 493-702 aa
PF12698
ABC2_membrane_3 546-737 aa
XP_057805269.1PF00005
ABC_tran 72-221 aa
PF19055
ABC2_membrane_7 250-548 aa
PF01061
ABC2_membrane 388-597 aa
XP_057805270.1PF00005
ABC_tran 30-179 aa
PF19055
ABC2_membrane_7 208-505 aa
PF01061
ABC2_membrane 346-555 aa
XP_057805271.1PF00005
ABC_tran 25-174 aa
PF19055
ABC2_membrane_7 203-500 aa
PF01061
ABC2_membrane 341-550 aa
XP_057805272.1PF00005
ABC_tran 12-161 aa
PF19055
ABC2_membrane_7 190-487 aa
PF01061
ABC2_membrane 328-537 aa
PF12698
ABC2_membrane_3 381-572 aa
XP_057805273.1PF00005
ABC_tran 12-161 aa
PF19055
ABC2_membrane_7 190-487 aa
PF01061
ABC2_membrane 328-537 aa
PF12698
ABC2_membrane_3 381-572 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057805268.1 |
Pfam | PF00005 |
ABC_tran | Domain | 177 | 326 | 8.7e-29 | 101.6 | ABC transporter |
XP_057805268.1 |
Pfam | PF19055 |
ABC2_membrane_7 | Family | 355 | 652 | 2.1e-16 | 60.5 | ABC-2 type transporter |
XP_057805268.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 493 | 702 | 2.7e-47 | 161.7 | ABC-2 type transporter |
XP_057805268.1 |
Pfam | PF12698 |
ABC2_membrane_3 | Family | 546 | 737 | 8.6e-08 | 32.4 | ABC-2 family transporter protein |
XP_057805269.1 |
Pfam | PF00005 |
ABC_tran | Domain | 72 | 221 | 7.1e-29 | 101.9 | ABC transporter |
XP_057805269.1 |
Pfam | PF19055 |
ABC2_membrane_7 | Family | 250 | 548 | 1.2e-16 | 61.3 | ABC-2 type transporter |
XP_057805269.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 388 | 597 | 2.3e-47 | 162.0 | ABC-2 type transporter |
XP_057805270.1 |
Pfam | PF00005 |
ABC_tran | Domain | 30 | 179 | 6.4e-29 | 102.0 | ABC transporter |
XP_057805270.1 |
Pfam | PF19055 |
ABC2_membrane_7 | Family | 208 | 505 | 1e-16 | 61.6 | ABC-2 type transporter |
XP_057805270.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 346 | 555 | 2e-47 | 162.2 | ABC-2 type transporter |
XP_057805271.1 |
Pfam | PF00005 |
ABC_tran | Domain | 25 | 174 | 6.3e-29 | 102.0 | ABC transporter |
XP_057805271.1 |
Pfam | PF19055 |
ABC2_membrane_7 | Family | 203 | 500 | 9.7e-17 | 61.6 | ABC-2 type transporter |
XP_057805271.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 341 | 550 | 2e-47 | 162.2 | ABC-2 type transporter |
XP_057805272.1 |
Pfam | PF00005 |
ABC_tran | Domain | 12 | 161 | 6.1e-29 | 102.1 | ABC transporter |
XP_057805272.1 |
Pfam | PF19055 |
ABC2_membrane_7 | Family | 190 | 487 | 9.6e-17 | 61.7 | ABC-2 type transporter |
XP_057805272.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 328 | 537 | 1.9e-47 | 162.3 | ABC-2 type transporter |
XP_057805272.1 |
Pfam | PF12698 |
ABC2_membrane_3 | Family | 381 | 572 | 1e-07 | 32.1 | ABC-2 family transporter protein |
XP_057805273.1 |
Pfam | PF00005 |
ABC_tran | Domain | 12 | 161 | 6.1e-29 | 102.1 | ABC transporter |
XP_057805273.1 |
Pfam | PF19055 |
ABC2_membrane_7 | Family | 190 | 487 | 9.6e-17 | 61.7 | ABC-2 type transporter |
XP_057805273.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 328 | 537 | 1.9e-47 | 162.3 | ABC-2 type transporter |
XP_057805273.1 |
Pfam | PF12698 |
ABC2_membrane_3 | Family | 381 | 572 | 1e-07 | 32.1 | ABC-2 family transporter protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
6 records
下载 cDNA FASTA6 records
下载 CDS FASTA6 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。