当前解析结果
SmilChr04G003604| 统一新 Gene ID | SmilChr04G003604 |
|---|---|
| 名称 | SmilChr04G003604 |
| 描述 | aluminum-activated malate transporter 8-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 52494122 - 52496554 / - |
| NCBI Gene ID | LOC131020479 |
|---|---|
| GeneID | 131020479 |
| locus_tag | - |
| NCBI Name | LOC131020479 |
| 原始查询 | LOC131020479 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | aluminum-activated malate transporter 8-like |
| 产物 | aluminum-activated malate transporter 8-like |
| Arabidopsis | AT3G11680 (AT3G11680)aluminum activated malate transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:820340] identity=52.1; qcov=0.958; evalue=2.51e-156; confidence=high |
| Rice | Os04g0417000 (OsALMT1)- identity=50.6; qcov=0.842; evalue=1.51e-134; confidence=high |
| GO | GO:0009705 (plant-type vacuole membrane); GO:0015743 (malate transport) |
| KEGG | - |
| Pfam | PF11744 (ALMT); PF13515 (FUSC_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020479 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057805284.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057805284.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057805284.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057805284.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057805284.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:52494342 |
ATC |
A |
2bp_deletion | frameshift_variant | 1 | D10 |
Chr4:52494342 |
ATC |
A |
2bp_deletion | CDS_variant | 1 | D10 |
Chr4:52494385 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C36 |
Chr4:52494420 |
G |
GA |
1bp_insertion | frameshift_variant | 4 | B61,B76,B95,C81 |
Chr4:52494420 |
G |
GA |
1bp_insertion | CDS_variant | 4 | B61,B76,B95,C81 |
Chr4:52494548 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr4:52494627 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr4:52494664 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B119 |
Chr4:52494800 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | B121,B81,C52 |
Chr4:52494800 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B121,B81,C52 |
Chr4:52494883 |
AGG |
A |
2bp_deletion | frameshift_variant | 3 | A25,B48,C4 |
Chr4:52494883 |
AGG |
A |
2bp_deletion | CDS_variant | 3 | A25,B48,C4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057805284.1PF11744
ALMT 33-382 aa
PF13515
FUSC_2 56-195 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057805284.1 |
Pfam | PF11744 |
ALMT | Family | 33 | 382 | 1.3e-145 | 486.6 | Aluminium activated malate transporter |
XP_057805284.1 |
Pfam | PF13515 |
FUSC_2 | Family | 56 | 195 | 3.2e-10 | 40.9 | Fusaric acid resistance protein-like |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。