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调控/突变
TF 结合位点 TF 靶基因 EMS 突变
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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G003607

染色体: Chr04 坐标: 52546779-52550752 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G003607
名称SmilChr04G003607
描述BEL1-like homeodomain protein 1
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向52546779 - 52550752 / +

ID 对照

NCBI Gene IDLOC131020481
GeneID131020481
locus_tag-
NCBI NameLOC131020481
原始查询LOC131020481

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述BEL1-like homeodomain protein 1
产物BEL1-like homeodomain protein 1
ArabidopsisAT2G35940 (BLH1)
BEL1-like homeodomain 1 [Source:NCBI gene (formerly Entrezgene);Acc:818167]
identity=39.2; qcov=1.4; evalue=2.8e-101; confidence=medium
RiceOs12g0636200
-
identity=37.2; qcov=1.04; evalue=7.16e-81; confidence=medium
GOGO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0006357 (regulation of transcription by RNA polymerase II)
KEGG-
PfamPF00046 (Homeodomain); PF05920 (Homeobox_KN); PF07526 (POX)
InterPro-
eggNOG-
NRGeneID:131020481

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057805285.1
2 Chromosome 染色体 0.00000 XP_057805285.1
3 Centromere 着丝粒 0.00000 XP_057805285.1
4 Chromatin 染色质 0.00000 XP_057805285.1
5 Telomere 端粒 0.00000 XP_057805285.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:52548286 C T EMS_canonical_SNV CDS_variant 1 B119
Chr4:52548580 G A EMS_canonical_SNV CDS_variant 1 C87
Chr4:52548679 G A EMS_canonical_SNV CDS_variant 2 B35,C15
Chr4:52548773 C T EMS_canonical_SNV CDS_variant 1 C60
Chr4:52549225 G A EMS_canonical_SNV CDS_variant 2 B35,C15
Chr4:52549433 C T EMS_canonical_SNV CDS_variant 1 B38
Chr4:52550052 G A EMS_canonical_SNV CDS_variant 1 B47
Chr4:52550094 C T EMS_canonical_SNV CDS_variant 1 C25
Chr4:52550336 C T EMS_canonical_SNV CDS_variant 2 C69,C73
Chr4:52550381 C T EMS_canonical_SNV CDS_variant 1 B117
Chr4:52550385 G A EMS_canonical_SNV CDS_variant 2 C11,C69
Chr4:52550396 G A EMS_canonical_SNV CDS_variant 2 C11,C69

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805285.1
495 aa
N
1
248
495
POX
Homeobox_KN
Homeodomain
C
PF07526 POX 121-245 aa PF05920 Homeobox_KN 293-332 aa PF00046 Homeodomain 295-332 aa
XP_057805286.1
495 aa
N
1
248
495
POX
Homeobox_KN
Homeodomain
C
PF07526 POX 121-245 aa PF05920 Homeobox_KN 293-332 aa PF00046 Homeodomain 295-332 aa
XP_057805287.1
495 aa
N
1
248
495
POX
Homeobox_KN
Homeodomain
C
PF07526 POX 121-245 aa PF05920 Homeobox_KN 293-332 aa PF00046 Homeodomain 295-332 aa
XP_057805288.1
495 aa
N
1
248
495
POX
Homeobox_KN
Homeodomain
C
PF07526 POX 121-245 aa PF05920 Homeobox_KN 293-332 aa PF00046 Homeodomain 295-332 aa
XP_057805289.1
495 aa
N
1
248
495
POX
Homeobox_KN
Homeodomain
C
PF07526 POX 121-245 aa PF05920 Homeobox_KN 293-332 aa PF00046 Homeodomain 295-332 aa
XP_057805291.1
495 aa
N
1
248
495
POX
Homeobox_KN
Homeodomain
C
PF07526 POX 121-245 aa PF05920 Homeobox_KN 293-332 aa PF00046 Homeodomain 295-332 aa
XP_057805292.1
495 aa
N
1
248
495
POX
Homeobox_KN
Homeodomain
C
PF07526 POX 121-245 aa PF05920 Homeobox_KN 293-332 aa PF00046 Homeodomain 295-332 aa
XP_057805293.1
495 aa
N
1
248
495
POX
Homeobox_KN
Homeodomain
C
PF07526 POX 121-245 aa PF05920 Homeobox_KN 293-332 aa PF00046 Homeodomain 295-332 aa
XP_057805294.1
495 aa
N
1
248
495
POX
Homeobox_KN
Homeodomain
C
PF07526 POX 121-245 aa PF05920 Homeobox_KN 293-332 aa PF00046 Homeodomain 295-332 aa
XP_057805295.1
495 aa
N
1
248
495
POX
Homeobox_KN
Homeodomain
C
PF07526 POX 121-245 aa PF05920 Homeobox_KN 293-332 aa PF00046 Homeodomain 295-332 aa
XP_057805296.1
495 aa
N
1
248
495
POX
Homeobox_KN
Homeodomain
C
PF07526 POX 121-245 aa PF05920 Homeobox_KN 293-332 aa PF00046 Homeodomain 295-332 aa
XP_057805297.1
484 aa
N
1
242
484
POX
Homeobox_KN
Homeodomain
C
PF07526 POX 110-234 aa PF05920 Homeobox_KN 282-321 aa PF00046 Homeodomain 284-321 aa
XP_057805298.1
484 aa
N
1
242
484
POX
Homeobox_KN
Homeodomain
C
PF07526 POX 110-234 aa PF05920 Homeobox_KN 282-321 aa PF00046 Homeodomain 284-321 aa
XP_057805299.1
484 aa
N
1
242
484
POX
Homeobox_KN
Homeodomain
C
PF07526 POX 110-234 aa PF05920 Homeobox_KN 282-321 aa PF00046 Homeodomain 284-321 aa
XP_057805300.1
484 aa
N
1
242
484
POX
Homeobox_KN
Homeodomain
C
PF07526 POX 110-234 aa PF05920 Homeobox_KN 282-321 aa PF00046 Homeodomain 284-321 aa
XP_057805302.1
484 aa
N
1
242
484
POX
Homeobox_KN
Homeodomain
C
PF07526 POX 110-234 aa PF05920 Homeobox_KN 282-321 aa PF00046 Homeodomain 284-321 aa
XP_057805303.1
484 aa
N
1
242
484
POX
Homeobox_KN
Homeodomain
C
PF07526 POX 110-234 aa PF05920 Homeobox_KN 282-321 aa PF00046 Homeodomain 284-321 aa
XP_057805304.1
484 aa
N
1
242
484
POX
Homeobox_KN
Homeodomain
C
PF07526 POX 110-234 aa PF05920 Homeobox_KN 282-321 aa PF00046 Homeodomain 284-321 aa
XP_057805305.1
484 aa
N
1
242
484
POX
Homeobox_KN
Homeodomain
C
PF07526 POX 110-234 aa PF05920 Homeobox_KN 282-321 aa PF00046 Homeodomain 284-321 aa
XP_057805306.1
484 aa
N
1
242
484
POX
Homeobox_KN
Homeodomain
C
PF07526 POX 110-234 aa PF05920 Homeobox_KN 282-321 aa PF00046 Homeodomain 284-321 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057805285.1 Pfam PF07526 POX Domain 121 245 1.2e-40 139.9 Associated with HOX
XP_057805285.1 Pfam PF05920 Homeobox_KN Family 293 332 1.2e-18 67.4 Homeobox KN domain
XP_057805285.1 Pfam PF00046 Homeodomain Domain 295 332 2e-06 28.2 Homeodomain
XP_057805286.1 Pfam PF07526 POX Domain 121 245 1.2e-40 139.9 Associated with HOX
XP_057805286.1 Pfam PF05920 Homeobox_KN Family 293 332 1.2e-18 67.4 Homeobox KN domain
XP_057805286.1 Pfam PF00046 Homeodomain Domain 295 332 2e-06 28.2 Homeodomain
XP_057805287.1 Pfam PF07526 POX Domain 121 245 1.2e-40 139.9 Associated with HOX
XP_057805287.1 Pfam PF05920 Homeobox_KN Family 293 332 1.2e-18 67.4 Homeobox KN domain
XP_057805287.1 Pfam PF00046 Homeodomain Domain 295 332 2e-06 28.2 Homeodomain
XP_057805288.1 Pfam PF07526 POX Domain 121 245 1.2e-40 139.9 Associated with HOX
XP_057805288.1 Pfam PF05920 Homeobox_KN Family 293 332 1.2e-18 67.4 Homeobox KN domain
XP_057805288.1 Pfam PF00046 Homeodomain Domain 295 332 2e-06 28.2 Homeodomain
XP_057805289.1 Pfam PF07526 POX Domain 121 245 1.2e-40 139.9 Associated with HOX
XP_057805289.1 Pfam PF05920 Homeobox_KN Family 293 332 1.2e-18 67.4 Homeobox KN domain
XP_057805289.1 Pfam PF00046 Homeodomain Domain 295 332 2e-06 28.2 Homeodomain
XP_057805291.1 Pfam PF07526 POX Domain 121 245 1.2e-40 139.9 Associated with HOX
XP_057805291.1 Pfam PF05920 Homeobox_KN Family 293 332 1.2e-18 67.4 Homeobox KN domain
XP_057805291.1 Pfam PF00046 Homeodomain Domain 295 332 2e-06 28.2 Homeodomain
XP_057805292.1 Pfam PF07526 POX Domain 121 245 1.2e-40 139.9 Associated with HOX
XP_057805292.1 Pfam PF05920 Homeobox_KN Family 293 332 1.2e-18 67.4 Homeobox KN domain
XP_057805292.1 Pfam PF00046 Homeodomain Domain 295 332 2e-06 28.2 Homeodomain
XP_057805293.1 Pfam PF07526 POX Domain 121 245 1.2e-40 139.9 Associated with HOX
XP_057805293.1 Pfam PF05920 Homeobox_KN Family 293 332 1.2e-18 67.4 Homeobox KN domain
XP_057805293.1 Pfam PF00046 Homeodomain Domain 295 332 2e-06 28.2 Homeodomain
XP_057805294.1 Pfam PF07526 POX Domain 121 245 1.2e-40 139.9 Associated with HOX
XP_057805294.1 Pfam PF05920 Homeobox_KN Family 293 332 1.2e-18 67.4 Homeobox KN domain
XP_057805294.1 Pfam PF00046 Homeodomain Domain 295 332 2e-06 28.2 Homeodomain
XP_057805295.1 Pfam PF07526 POX Domain 121 245 1.2e-40 139.9 Associated with HOX
XP_057805295.1 Pfam PF05920 Homeobox_KN Family 293 332 1.2e-18 67.4 Homeobox KN domain
XP_057805295.1 Pfam PF00046 Homeodomain Domain 295 332 2e-06 28.2 Homeodomain
XP_057805296.1 Pfam PF07526 POX Domain 121 245 1.2e-40 139.9 Associated with HOX
XP_057805296.1 Pfam PF05920 Homeobox_KN Family 293 332 1.2e-18 67.4 Homeobox KN domain
XP_057805296.1 Pfam PF00046 Homeodomain Domain 295 332 2e-06 28.2 Homeodomain
XP_057805297.1 Pfam PF07526 POX Domain 110 234 1.1e-40 140.0 Associated with HOX
XP_057805297.1 Pfam PF05920 Homeobox_KN Family 282 321 1.1e-18 67.4 Homeobox KN domain
XP_057805297.1 Pfam PF00046 Homeodomain Domain 284 321 1.9e-06 28.3 Homeodomain
XP_057805298.1 Pfam PF07526 POX Domain 110 234 1.1e-40 140.0 Associated with HOX
XP_057805298.1 Pfam PF05920 Homeobox_KN Family 282 321 1.1e-18 67.4 Homeobox KN domain
XP_057805298.1 Pfam PF00046 Homeodomain Domain 284 321 1.9e-06 28.3 Homeodomain
XP_057805299.1 Pfam PF07526 POX Domain 110 234 1.1e-40 140.0 Associated with HOX
XP_057805299.1 Pfam PF05920 Homeobox_KN Family 282 321 1.1e-18 67.4 Homeobox KN domain
XP_057805299.1 Pfam PF00046 Homeodomain Domain 284 321 1.9e-06 28.3 Homeodomain
XP_057805300.1 Pfam PF07526 POX Domain 110 234 1.1e-40 140.0 Associated with HOX
XP_057805300.1 Pfam PF05920 Homeobox_KN Family 282 321 1.1e-18 67.4 Homeobox KN domain
XP_057805300.1 Pfam PF00046 Homeodomain Domain 284 321 1.9e-06 28.3 Homeodomain
XP_057805302.1 Pfam PF07526 POX Domain 110 234 1.1e-40 140.0 Associated with HOX
XP_057805302.1 Pfam PF05920 Homeobox_KN Family 282 321 1.1e-18 67.4 Homeobox KN domain
XP_057805302.1 Pfam PF00046 Homeodomain Domain 284 321 1.9e-06 28.3 Homeodomain
XP_057805303.1 Pfam PF07526 POX Domain 110 234 1.1e-40 140.0 Associated with HOX
XP_057805303.1 Pfam PF05920 Homeobox_KN Family 282 321 1.1e-18 67.4 Homeobox KN domain
XP_057805303.1 Pfam PF00046 Homeodomain Domain 284 321 1.9e-06 28.3 Homeodomain
XP_057805304.1 Pfam PF07526 POX Domain 110 234 1.1e-40 140.0 Associated with HOX
XP_057805304.1 Pfam PF05920 Homeobox_KN Family 282 321 1.1e-18 67.4 Homeobox KN domain
XP_057805304.1 Pfam PF00046 Homeodomain Domain 284 321 1.9e-06 28.3 Homeodomain
XP_057805305.1 Pfam PF07526 POX Domain 110 234 1.1e-40 140.0 Associated with HOX
XP_057805305.1 Pfam PF05920 Homeobox_KN Family 282 321 1.1e-18 67.4 Homeobox KN domain
XP_057805305.1 Pfam PF00046 Homeodomain Domain 284 321 1.9e-06 28.3 Homeodomain
XP_057805306.1 Pfam PF07526 POX Domain 110 234 1.1e-40 140.0 Associated with HOX
XP_057805306.1 Pfam PF05920 Homeobox_KN Family 282 321 1.1e-18 67.4 Homeobox KN domain
XP_057805306.1 Pfam PF00046 Homeodomain Domain 284 321 1.9e-06 28.3 Homeodomain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

20 records

下载 cDNA FASTA
XM_057949302.1
AGAGCCCCCCTGACCCATCCTACGACCCCACCTCCTTTTAGAAAAAGGAGAAAAATGGGCATCCCTCGACTCATATCATTCATTCACGATCAACACCATAATCATCTCTTCTTCAATATAATTATTACAATTCTTCTTCTTTTCTTCTTGTTTTTTTTTTTTGTTTTTTTCAAATGTTGCGATAGAATAATAATATTCAGTTAGAAGTGGACGTTTCCTCGTTTTTCAGCTGTTTTTGGATTTGTTTGTTAGAATGACGA...
XM_057949308.1
CCCCCTGACCCATCCTACGACCCCACCTCCTTTTAGAAAAAGGAGAAAAATGGGCATCCCTCGACTCATATCATTCATTCACGATCAACACCATAATCATCTCTTCTTCAATATAATTATTACAATTCTTCTTCTTTTCTTCTTGTTTTTTTTTTTTGTTTTTTTCAAATGTTGCGATAGAATAATAATATTCAGTTAGAAGTGGACGTTTCCTCGTTTTTCAGCTGTTTTTGGATTTGTTTGTTAGAATGACGAACGGA...

CDS

20 records

下载 CDS FASTA
LOC131020481
ATGGCGACGTACTTCCATGGCAATAATACAGAAATGCAAGGAAACGGCGACGCTTTACAAACCCTTATTCTCATGAACCCCGCCTACAACGGATACTCCGACAACCTTCCTCCGCCGCCCTCCTCCGCCAACTTCATATTCCTCAACTCCAGCTCCTCCGCAAACGCCGCCTCTCAGATTCAGCATCTCGCCGGCATCCCTCTCCAAGCCTCGCCGCTGCACCAAGACGCACGCTTCCTCTACAGCAGCGCCGCGCGTGA...
LOC131020481
ATGGCGACGTACTTCCATGGCAATAATACAGAAATGCAAGGAAACGGCGACGCTTTACAAACCCTTATTCTCATGAACCCCGCCTACAACGGATACTCCGACAACCTTCCTCCGCCGCCCTCCTCCGCCAACTTCATATTCCTCAACTCCAGCTCCTCCGCAAACGCCGCCTCTCAGATTCAGCATCTCGCCGGCATCCCTCTCCAAGCCTCGCCGCTGCACCAAGACGCACGCTTCCTCTACAGCAGCGCCGCGCGTGA...

Protein

20 records

下载 Protein FASTA
XP_057805285.1
MATYFHGNNTEMQGNGDALQTLILMNPAYNGYSDNLPPPPSSANFIFLNSSSSANAASQIQHLAGIPLQASPLHQDARFLYSSAAREVTRSKQGLSLSLSSQQPSQPEEVRVSGAPEKAALSCKYLKVAQQLLDEVVNIRKEANNGRESDNGQPKTTAEPPPGDGRAKCGADLTTAEKQEIQMKKAKLVDLLHQVEQRYKQYDEQMQMVIKWLEEAAGVGSAKTYTSLALQTISKQFRCLKDAIMLQIRGATTNLGEMNN...
XP_057805286.1
MATYFHGNNTEMQGNGDALQTLILMNPAYNGYSDNLPPPPSSANFIFLNSSSSANAASQIQHLAGIPLQASPLHQDARFLYSSAAREVTRSKQGLSLSLSSQQPSQPEEVRVSGAPEKAALSCKYLKVAQQLLDEVVNIRKEANNGRESDNGQPKTTAEPPPGDGRAKCGADLTTAEKQEIQMKKAKLVDLLHQVEQRYKQYDEQMQMVIKWLEEAAGVGSAKTYTSLALQTISKQFRCLKDAIMLQIRGATTNLGEMNN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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