Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003613`

染色体: Chr04 坐标: 52615537-52623935 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003613`
名称	SmilChr04G003613
描述	probable ethanolamine kinase
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	52615537 - 52623935 / `+`

ID 对照

NCBI Gene ID	`LOC131020485`
GeneID	`131020485`
locus_tag	`-`
NCBI Name	`LOC131020485`
原始查询	`LOC131020485`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable ethanolamine kinase
产物	probable ethanolamine kinase
Arabidopsis	`AT2G26830` (emb1187) Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817224] identity=65.7; qcov=0.987; evalue=1.05e-146; confidence=high
Rice	`Os09g0438400` - identity=66.3; qcov=0.889; evalue=3.23e-135; confidence=high
GO	GO:0004103 (choline kinase activity); GO:0004305 (ethanolamine kinase activity); GO:0005737 (cytoplasm); GO:0006646 (phosphatidylethanolamine biosynthetic process); GO:0006656 (phosphatidylcholine biosynthetic process)
KEGG	smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF01633 (Choline_kinase); PF01636 (APH)
InterPro	-
eggNOG	-
NR	GeneID:131020485

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057805313.1`
2	Cytoplasm	细胞质	1.00000	`XP_057805314.1`
3	Nucleus	细胞核	0.60000	`XP_057805314.1`
4	Chromosome	染色体	0.00000	`XP_057805313.1`
5	Centromere	着丝粒	0.00000	`XP_057805313.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:52615628`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A23,B36
`Chr4:52617491`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B104,B2,C20,D11
`Chr4:52623461`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr4:52623679`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B104,B2,C20,D11
`Chr4:52623697`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805313.1

371 aa

186

371

Choline_kinase

APH

PF01633 Choline_kinase 63-353 aa PF01636 APH 64-268 aa

XP_057805314.1

307 aa

154

307

Choline_kinase

APH

PF01633 Choline_kinase 63-297 aa PF01636 APH 64-268 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805313.1`	Pfam	`PF01633`	Choline_kinase	Domain	63	353	8.6e-95	318.2	Choline/ethanolamine kinase
`XP_057805313.1`	Pfam	`PF01636`	APH	Domain	64	268	7.1e-17	62.7	Phosphotransferase enzyme family
`XP_057805314.1`	Pfam	`PF01633`	Choline_kinase	Domain	63	297	2.8e-76	257.5	Choline/ethanolamine kinase
`XP_057805314.1`	Pfam	`PF01636`	APH	Domain	64	268	4.3e-17	63.4	Phosphotransferase enzyme family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057949330.1
CAAGCCGTTGCTCGAATTGCGATTCTTCTCCATCAATGGGGGCGGCGCATAAGATTTGGAACGCGACGGAAGTGGCGGAGACGCACAGCTCCGAGATTCCGTCGTCTTCTCTCACCATCGACCACTCCCTCTCTCTGCCTGCAATGAAGCCCCGCATCGTGGAGCTTTTCAAAGATTTATTCAAACAATGGTCAAAGTTGGATGAGTCAGATTTCTCCCTTGAGACAGTGTCTGGTGGCATCACAAATCTGTTACTCAAG...

XM_057949331.1
CAAGCCGTTGCTCGAATTGCGATTCTTCTCCATCAATGGGGGCGGCGCATAAGATTTGGAACGCGACGGAAGTGGCGGAGACGCACAGCTCCGAGATTCCGTCGTCTTCTCTCACCATCGACCACTCCCTCTCTCTGCCTGCAATGAAGCCCCGCATCGTGGAGCTTTTCAAAGATTTATTCAAACAATGGTCAAAGTTGGATGAGTCAGATTTCTCCCTTGAGACAGTGTCTGGTGGCATCACAAATCTGTTACTCAAG...

CDS

2 records

下载 CDS FASTA

LOC131020485
ATGGGGGCGGCGCATAAGATTTGGAACGCGACGGAAGTGGCGGAGACGCACAGCTCCGAGATTCCGTCGTCTTCTCTCACCATCGACCACTCCCTCTCTCTGCCTGCAATGAAGCCCCGCATCGTGGAGCTTTTCAAAGATTTATTCAAACAATGGTCAAAGTTGGATGAGTCAGATTTCTCCCTTGAGACAGTGTCTGGTGGCATCACAAATCTGTTACTCAAGGTTTCTGTGAGAGAAAAAGATGGAAGTGCTGTCAG...

Protein

2 records

下载 Protein FASTA

XP_057805313.1
MGAAHKIWNATEVAETHSSEIPSSSLTIDHSLSLPAMKPRIVELFKDLFKQWSKLDESDFSLETVSGGITNLLLKVSVREKDGSAVSTTVRLYGPNTEYVIDRQRELQAIPHLSAAGFGAKLLGVFGNGMVQSFIDARTLTPSDMRQPKLVAEIAKQLRRFHEVEIPGSREPQLWNDISKFFTRALTLEFDDSEKQKKYKMISFDEINQEINDLKAMADRFNAPVLFCHNDLLSGNLMLNEDEGKLYFIDFEYGSYNYRG...

XP_057805314.1
MGAAHKIWNATEVAETHSSEIPSSSLTIDHSLSLPAMKPRIVELFKDLFKQWSKLDESDFSLETVSGGITNLLLKVSVREKDGSAVSTTVRLYGPNTEYVIDRQRELQAIPHLSAAGFGAKLLGVFGNGMVQSFIDARTLTPSDMRQPKLVAEIAKQLRRFHEVEIPGSREPQLWNDISKFFTRALTLEFDDSEKQKKYKMISFDEINQEINDLKAMADRFNAPVLFCHNDLLSGNLMLNEDEGKLYFIDFEYGSYNYRG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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