当前解析结果
SmilChr04G003615| 统一新 Gene ID | SmilChr04G003615 |
|---|---|
| 名称 | SmilChr04G003615 |
| 描述 | DExH-box ATP-dependent RNA helicase DExH1 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 52635040 - 52644239 / - |
| NCBI Gene ID | LOC131020488 |
|---|---|
| GeneID | 131020488 |
| locus_tag | - |
| NCBI Name | LOC131020488 |
| 原始查询 | LOC131020488 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DExH-box ATP-dependent RNA helicase DExH1 |
| 产物 | DExH-box ATP-dependent RNA helicase DExH1 |
| Arabidopsis | AT2G35920 (AT2G35920)RNA helicase family protein [Source:NCBI gene (formerly Entrezgene);Acc:818165] identity=75.3; qcov=1; evalue=0; confidence=high |
| Rice | Os10g0471350- identity=74.8; qcov=0.998; evalue=0; confidence=high |
| GO | GO:0003723 (RNA binding); GO:0005524 (ATP binding); GO:0005622 (intracellular anatomical structure); GO:0005634 (nucleus) |
| KEGG | smil03018 (RNA degradation - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00270 (DEAD); PF00271 (Helicase_C); PF04408 (WHD_HA2); PF07717 (OB_NTP_bind); PF21010 (HA2_C); PF26026 (RNA_hel_CTD); PF27261 (DEXH1_3_5_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020488 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057805319.1 |
| 2 | Mitochondrion | 线粒体 | 0.80000 | XP_057805318.1 |
| 3 | Cytoplasm | 细胞质 | 0.80000 | XP_057805319.1 |
| 4 | Cytosol | 细胞质基质 | 0.60000 | XP_057805319.1 |
| 5 | Mitochondrion matrix | 线粒体基质 | 0.40000 | XP_057805318.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:52635628 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr4:52635689 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B56 |
Chr4:52635805 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B127 |
Chr4:52635805 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B127 |
Chr4:52635966 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A19,B83,B97,C75 |
Chr4:52636186 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B50,B6,C47,C63 |
Chr4:52636188 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
Chr4:52636509 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B74 |
Chr4:52636509 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B74 |
Chr4:52636510 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B128 |
Chr4:52636546 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B126,B55 |
Chr4:52636810 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B119,C36,C84 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057805318.1PF27261
DEXH1_3_5_N 109-180 aa
PF00270
DEAD 277-433 aa
PF00271
Helicase_C 535-664 aa
PF04408
WHD_HA2 728-756 aa
PF21010
HA2_C 757-817 aa
PF07717
OB_NTP_bind 885-966 aa
PF26026
RNA_hel_CTD 976-1033 aa
XP_057805319.1PF00270
DEAD 91-247 aa
PF00271
Helicase_C 349-478 aa
PF04408
WHD_HA2 542-570 aa
PF21010
HA2_C 571-631 aa
PF07717
OB_NTP_bind 699-780 aa
PF26026
RNA_hel_CTD 790-847 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057805318.1 |
Pfam | PF27261 |
DEXH1_3_5_N | Domain | 109 | 180 | 4.1e-29 | 101.3 | DEXH1_3_5, N-terminal domain |
XP_057805318.1 |
Pfam | PF00270 |
DEAD | Domain | 277 | 433 | 2.6e-09 | 37.8 | DEAD/DEAH box helicase |
XP_057805318.1 |
Pfam | PF00271 |
Helicase_C | Domain | 535 | 664 | 2.4e-14 | 54.2 | Helicase conserved C-terminal domain |
XP_057805318.1 |
Pfam | PF04408 |
WHD_HA2 | Domain | 728 | 756 | 1.3e-09 | 38.6 | Helicase associated domain (HA2), winged-helix |
XP_057805318.1 |
Pfam | PF21010 |
HA2_C | Domain | 757 | 817 | 6.1e-14 | 53.0 | Helicase associated domain (HA2), ratchet-like |
XP_057805318.1 |
Pfam | PF07717 |
OB_NTP_bind | Domain | 885 | 966 | 5.5e-18 | 65.7 | Oligonucleotide/oligosaccharide-binding (OB)-fold |
XP_057805318.1 |
Pfam | PF26026 |
RNA_hel_CTD | Domain | 976 | 1033 | 7.4e-19 | 68.0 | C-terminal domain in RNA helicases |
XP_057805319.1 |
Pfam | PF00270 |
DEAD | Domain | 91 | 247 | 1.9e-09 | 38.2 | DEAD/DEAH box helicase |
XP_057805319.1 |
Pfam | PF00271 |
Helicase_C | Domain | 349 | 478 | 1.8e-14 | 54.6 | Helicase conserved C-terminal domain |
XP_057805319.1 |
Pfam | PF04408 |
WHD_HA2 | Domain | 542 | 570 | 1e-09 | 38.9 | Helicase associated domain (HA2), winged-helix |
XP_057805319.1 |
Pfam | PF21010 |
HA2_C | Domain | 571 | 631 | 4.7e-14 | 53.4 | Helicase associated domain (HA2), ratchet-like |
XP_057805319.1 |
Pfam | PF07717 |
OB_NTP_bind | Domain | 699 | 780 | 4.7e-18 | 65.9 | Oligonucleotide/oligosaccharide-binding (OB)-fold |
XP_057805319.1 |
Pfam | PF26026 |
RNA_hel_CTD | Domain | 790 | 847 | 5.2e-19 | 68.5 | C-terminal domain in RNA helicases |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。