当前解析结果
SmilChr04G003640| 统一新 Gene ID | SmilChr04G003640 |
|---|---|
| 名称 | SmilChr04G003640 |
| 描述 | S-adenosylmethionine synthase 3 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 52876039 - 52878239 / - |
| NCBI Gene ID | LOC131020510 |
|---|---|
| GeneID | 131020510 |
| locus_tag | - |
| NCBI Name | LOC131020510 |
| 原始查询 | LOC131020510 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | S-adenosylmethionine synthase 3 |
| 产物 | S-adenosylmethionine synthase 3 |
| Arabidopsis | AT2G36880 (MAT3)methionine adenosyltransferase 3 [Source:NCBI gene (formerly Entrezgene);Acc:818260] identity=93.1; qcov=1; evalue=0; confidence=high |
| Rice | Os05g0135700 (OsSAMS1)- identity=88.6; qcov=0.992; evalue=0; confidence=high |
| GO | GO:0004478 (methionine adenosyltransferase activity); GO:0005524 (ATP binding); GO:0005829 (cytosol); GO:0006556 (S-adenosylmethionine biosynthetic process) |
| KEGG | smil00270 (Cysteine and methionine metabolism - Salvia miltiorrhiza (redroot sage)); smil00670 (One carbon pool by folate - Salvia miltiorrhiza (redroot sage)); smil00999 (Biosynthesis of various plant secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00438 (S-AdoMet_synt_N); PF02772 (S-AdoMet_synt_M); PF02773 (S-AdoMet_synt_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020510 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057805343.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057805343.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057805343.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057805343.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057805343.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:52876351 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A21,B70 |
Chr4:52876357 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C17 |
Chr4:52876432 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr4:52876621 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B140,B44 |
Chr4:52876684 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B114,C51 |
Chr4:52876693 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B117 |
Chr4:52876783 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A21,B70 |
Chr4:52876833 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A21,B70 |
Chr4:52876852 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B114,C51 |
Chr4:52876987 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:52877026 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B59 |
Chr4:52877029 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057805343.1PF00438
S-AdoMet_synt_N 4-101 aa
PF02772
S-AdoMet_synt_M 117-238 aa
PF02773
S-AdoMet_synt_C 240-381 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057805343.1 |
Pfam | PF00438 |
S-AdoMet_synt_N | Domain | 4 | 101 | 1e-43 | 148.6 | S-adenosylmethionine synthetase, N-terminal domain |
XP_057805343.1 |
Pfam | PF02772 |
S-AdoMet_synt_M | Domain | 117 | 238 | 1.3e-48 | 164.8 | S-adenosylmethionine synthetase, central domain |
XP_057805343.1 |
Pfam | PF02773 |
S-AdoMet_synt_C | Domain | 240 | 381 | 1.5e-61 | 207.0 | S-adenosylmethionine synthetase, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。