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调控/突变
TF 结合位点 TF 靶基因 EMS 突变
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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G003661

染色体: Chr04 坐标: 53080219-53085777 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G003661
名称SmilChr04G003661
描述uncharacterized SmilChr04G003661
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向53080219 - 53085777 / +

ID 对照

NCBI Gene IDLOC131020533
GeneID131020533
locus_tag-
NCBI NameLOC131020533
原始查询LOC131020533

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述TRF-like 8 [Source:NCBI gene (formerly Entrezgene);Acc:818277]; symbol=TRFL8; hit=AT2G37025; species=arabidopsis; confidence=weak
产物TRF-like 8 [Source:NCBI gene (formerly Entrezgene);Acc:818277]; symbol=TRFL8; hit=AT2G37025; species=arabidopsis; confidence=weak
ArabidopsisAT2G37025 (TRFL8)
TRF-like 8 [Source:NCBI gene (formerly Entrezgene);Acc:818277]
identity=49.5; qcov=0.226; evalue=2.2e-31; confidence=weak
RiceOs02g0776700
-
identity=53.6; qcov=0.197; evalue=7.15e-26; confidence=weak
GO-
KEGG-
PfamPF00249 (Myb_DNA-binding); PF13921 (Myb_DNA-bind_6)
InterPro-
eggNOG-
NRGeneID:131020533

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057805385.1
2 Chromosome 染色体 0.00000 XP_057805385.1
3 Centromere 着丝粒 0.00000 XP_057805385.1
4 Chromatin 染色质 0.00000 XP_057805385.1
5 Telomere 端粒 0.00000 XP_057805385.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:53081228 G A EMS_canonical_SNV CDS_variant 3 A11,A7,C76
Chr4:53083545 C T EMS_canonical_SNV CDS_variant 1 C28
Chr4:53084928 G A EMS_canonical_SNV CDS_variant 3 B108,B33,C53
Chr4:53085033 G A EMS_canonical_SNV CDS_variant 2 B124,B28
Chr4:53085168 C T EMS_canonical_SNV CDS_variant 1 B41
Chr4:53085399 GA G 1bp_deletion frameshift_variant 2 B33,C53
Chr4:53085399 GA G 1bp_deletion CDS_variant 2 B33,C53
Chr4:53085430 G A EMS_canonical_SNV CDS_variant 1 B131
Chr4:53085518 A AG 1bp_insertion frameshift_variant 5 B26,B3,B37,B45,C2
Chr4:53085518 A AG 1bp_insertion CDS_variant 5 B26,B3,B37,B45,C2
Chr4:53085541 G A EMS_canonical_SNV CDS_variant 1 B100

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805385.1
619 aa
N
1
310
619
Myb_DNA-binding
Myb_DNA-bind_6
C
PF00249 Myb_DNA-binding 491-538 aa PF13921 Myb_DNA-bind_6 491-541 aa
XP_057805386.1
616 aa
N
1
308
616
Myb_DNA-binding
Myb_DNA-bind_6
C
PF00249 Myb_DNA-binding 488-535 aa PF13921 Myb_DNA-bind_6 488-538 aa
XP_057805388.1
614 aa
N
1
307
614
Myb_DNA-binding
Myb_DNA-bind_6
C
PF00249 Myb_DNA-binding 486-533 aa PF13921 Myb_DNA-bind_6 486-536 aa
XP_057805389.1
613 aa
N
1
306
613
Myb_DNA-binding
Myb_DNA-bind_6
C
PF00249 Myb_DNA-binding 485-532 aa PF13921 Myb_DNA-bind_6 485-535 aa
XP_057805390.1
613 aa
N
1
306
613
Myb_DNA-binding
Myb_DNA-bind_6
C
PF00249 Myb_DNA-binding 485-532 aa PF13921 Myb_DNA-bind_6 485-535 aa
XP_057805391.1
576 aa
N
1
288
576
Myb_DNA-binding
Myb_DNA-bind_6
C
PF00249 Myb_DNA-binding 447-494 aa PF13921 Myb_DNA-bind_6 447-497 aa
XP_057805392.1
575 aa
N
1
288
575
Myb_DNA-binding
Myb_DNA-bind_6
C
PF00249 Myb_DNA-binding 447-494 aa PF13921 Myb_DNA-bind_6 447-497 aa
XP_057805393.1
570 aa
N
1
285
570
Myb_DNA-binding
Myb_DNA-bind_6
C
PF00249 Myb_DNA-binding 441-488 aa PF13921 Myb_DNA-bind_6 441-491 aa
XP_057805394.1
570 aa
N
1
285
570
Myb_DNA-binding
Myb_DNA-bind_6
C
PF00249 Myb_DNA-binding 441-488 aa PF13921 Myb_DNA-bind_6 441-491 aa
XP_057805395.1
569 aa
N
1
284
569
Myb_DNA-binding
Myb_DNA-bind_6
C
PF00249 Myb_DNA-binding 441-488 aa PF13921 Myb_DNA-bind_6 441-491 aa
XP_057805396.1
569 aa
N
1
284
569
Myb_DNA-binding
Myb_DNA-bind_6
C
PF00249 Myb_DNA-binding 441-488 aa PF13921 Myb_DNA-bind_6 441-491 aa
XP_057805397.1
546 aa
N
1
273
546
Myb_DNA-binding
Myb_DNA-bind_6
C
PF00249 Myb_DNA-binding 418-465 aa PF13921 Myb_DNA-bind_6 418-468 aa
XP_057805398.1
541 aa
N
1
270
541
Myb_DNA-binding
Myb_DNA-bind_6
C
PF00249 Myb_DNA-binding 413-460 aa PF13921 Myb_DNA-bind_6 413-463 aa
XP_057805399.1
541 aa
N
1
270
541
Myb_DNA-binding
Myb_DNA-bind_6
C
PF00249 Myb_DNA-binding 413-460 aa PF13921 Myb_DNA-bind_6 413-463 aa
XP_057805400.1
541 aa
N
1
270
541
Myb_DNA-binding
Myb_DNA-bind_6
C
PF00249 Myb_DNA-binding 413-460 aa PF13921 Myb_DNA-bind_6 413-463 aa
XP_057805401.1
536 aa
N
1
268
536
Myb_DNA-binding
Myb_DNA-bind_6
C
PF00249 Myb_DNA-binding 408-455 aa PF13921 Myb_DNA-bind_6 408-458 aa
XP_057805402.1
536 aa
N
1
268
536
Myb_DNA-binding
Myb_DNA-bind_6
C
PF00249 Myb_DNA-binding 408-455 aa PF13921 Myb_DNA-bind_6 408-458 aa
XP_057805404.1
531 aa
N
1
266
531
Myb_DNA-binding
Myb_DNA-bind_6
C
PF00249 Myb_DNA-binding 403-450 aa PF13921 Myb_DNA-bind_6 403-453 aa
XP_057805405.1
497 aa
N
1
248
497
Myb_DNA-binding
Myb_DNA-bind_6
C
PF00249 Myb_DNA-binding 369-416 aa PF13921 Myb_DNA-bind_6 369-419 aa
XP_057805406.1
492 aa
N
1
246
492
Myb_DNA-binding
Myb_DNA-bind_6
C
PF00249 Myb_DNA-binding 364-411 aa PF13921 Myb_DNA-bind_6 364-414 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057805385.1 Pfam PF00249 Myb_DNA-binding Domain 491 538 9.3e-09 36.0 Myb-like DNA-binding domain
XP_057805385.1 Pfam PF13921 Myb_DNA-bind_6 Domain 491 541 1.9e-06 28.7 Myb-like DNA-binding domain
XP_057805386.1 Pfam PF00249 Myb_DNA-binding Domain 488 535 9.3e-09 36.0 Myb-like DNA-binding domain
XP_057805386.1 Pfam PF13921 Myb_DNA-bind_6 Domain 488 538 1.9e-06 28.7 Myb-like DNA-binding domain
XP_057805388.1 Pfam PF00249 Myb_DNA-binding Domain 486 533 9.2e-09 36.0 Myb-like DNA-binding domain
XP_057805388.1 Pfam PF13921 Myb_DNA-bind_6 Domain 486 536 1.9e-06 28.7 Myb-like DNA-binding domain
XP_057805389.1 Pfam PF00249 Myb_DNA-binding Domain 485 532 9.2e-09 36.0 Myb-like DNA-binding domain
XP_057805389.1 Pfam PF13921 Myb_DNA-bind_6 Domain 485 535 1.9e-06 28.7 Myb-like DNA-binding domain
XP_057805390.1 Pfam PF00249 Myb_DNA-binding Domain 485 532 9.2e-09 36.0 Myb-like DNA-binding domain
XP_057805390.1 Pfam PF13921 Myb_DNA-bind_6 Domain 485 535 1.9e-06 28.7 Myb-like DNA-binding domain
XP_057805391.1 Pfam PF00249 Myb_DNA-binding Domain 447 494 8.6e-09 36.1 Myb-like DNA-binding domain
XP_057805391.1 Pfam PF13921 Myb_DNA-bind_6 Domain 447 497 1.9e-06 28.6 Myb-like DNA-binding domain
XP_057805392.1 Pfam PF00249 Myb_DNA-binding Domain 447 494 8.5e-09 36.1 Myb-like DNA-binding domain
XP_057805392.1 Pfam PF13921 Myb_DNA-bind_6 Domain 447 497 1.7e-06 28.8 Myb-like DNA-binding domain
XP_057805393.1 Pfam PF00249 Myb_DNA-binding Domain 441 488 8.5e-09 36.1 Myb-like DNA-binding domain
XP_057805393.1 Pfam PF13921 Myb_DNA-bind_6 Domain 441 491 1.9e-06 28.7 Myb-like DNA-binding domain
XP_057805394.1 Pfam PF00249 Myb_DNA-binding Domain 441 488 8.5e-09 36.1 Myb-like DNA-binding domain
XP_057805394.1 Pfam PF13921 Myb_DNA-bind_6 Domain 441 491 1.9e-06 28.7 Myb-like DNA-binding domain
XP_057805395.1 Pfam PF00249 Myb_DNA-binding Domain 441 488 8.4e-09 36.1 Myb-like DNA-binding domain
XP_057805395.1 Pfam PF13921 Myb_DNA-bind_6 Domain 441 491 1.7e-06 28.8 Myb-like DNA-binding domain
XP_057805396.1 Pfam PF00249 Myb_DNA-binding Domain 441 488 8.4e-09 36.1 Myb-like DNA-binding domain
XP_057805396.1 Pfam PF13921 Myb_DNA-bind_6 Domain 441 491 1.7e-06 28.8 Myb-like DNA-binding domain
XP_057805397.1 Pfam PF00249 Myb_DNA-binding Domain 418 465 7.9e-09 36.2 Myb-like DNA-binding domain
XP_057805397.1 Pfam PF13921 Myb_DNA-bind_6 Domain 418 468 1.6e-06 28.9 Myb-like DNA-binding domain
XP_057805398.1 Pfam PF00249 Myb_DNA-binding Domain 413 460 7.8e-09 36.2 Myb-like DNA-binding domain
XP_057805398.1 Pfam PF13921 Myb_DNA-bind_6 Domain 413 463 1.5e-06 29.0 Myb-like DNA-binding domain
XP_057805399.1 Pfam PF00249 Myb_DNA-binding Domain 413 460 7.8e-09 36.2 Myb-like DNA-binding domain
XP_057805399.1 Pfam PF13921 Myb_DNA-bind_6 Domain 413 463 1.5e-06 29.0 Myb-like DNA-binding domain
XP_057805400.1 Pfam PF00249 Myb_DNA-binding Domain 413 460 7.8e-09 36.2 Myb-like DNA-binding domain
XP_057805400.1 Pfam PF13921 Myb_DNA-bind_6 Domain 413 463 1.5e-06 29.0 Myb-like DNA-binding domain
XP_057805401.1 Pfam PF00249 Myb_DNA-binding Domain 408 455 7.7e-09 36.3 Myb-like DNA-binding domain
XP_057805401.1 Pfam PF13921 Myb_DNA-bind_6 Domain 408 458 1.5e-06 29.0 Myb-like DNA-binding domain
XP_057805402.1 Pfam PF00249 Myb_DNA-binding Domain 408 455 7.7e-09 36.3 Myb-like DNA-binding domain
XP_057805402.1 Pfam PF13921 Myb_DNA-bind_6 Domain 408 458 1.5e-06 29.0 Myb-like DNA-binding domain
XP_057805404.1 Pfam PF00249 Myb_DNA-binding Domain 403 450 7.5e-09 36.3 Myb-like DNA-binding domain
XP_057805404.1 Pfam PF13921 Myb_DNA-bind_6 Domain 403 453 1.5e-06 29.0 Myb-like DNA-binding domain
XP_057805405.1 Pfam PF00249 Myb_DNA-binding Domain 369 416 6.9e-09 36.4 Myb-like DNA-binding domain
XP_057805405.1 Pfam PF13921 Myb_DNA-bind_6 Domain 369 419 1.4e-06 29.1 Myb-like DNA-binding domain
XP_057805406.1 Pfam PF00249 Myb_DNA-binding Domain 364 411 6.8e-09 36.4 Myb-like DNA-binding domain
XP_057805406.1 Pfam PF13921 Myb_DNA-bind_6 Domain 364 414 1.4e-06 29.1 Myb-like DNA-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

20 records

下载 cDNA FASTA
XM_057949411.1
GAGAAAAGCAATAACTGCGCCTCGCCACGGCGGACCCCAAACCCCATATTCCATTACAGCTTTGTGCCCCTACTTTCGGTTCCGTCGAATATATTGCGTCACTCTACTAACTCTCACACCACCTCCGCTGCACTCACTTTTCCCCATTCCCTTTTGCTTTTTCTCTCCTCTCCGCCTTTCTCTCTCCTCCGCACCCGCGCCGAGGAACCGCTCAGGGATTCAGGCGGTTTCGATATCATCAGGTCATGGAGAATGGACAT...
XM_057949410.1
GAGAAAAGCAATAACTGCGCCTCGCCACGGCGGACCCCAAACCCCATATTCCATTACAGCTTTGTGCCCCTACTTTCGGTTCCGTCGAATATATTGCGTCACTCTACTAACTCTCACACCACCTCCGCTGCACTCACTTTTCCCCATTCCCTTTTGCTTTTTCTCTCCTCTCCGCCTTTCTCTCTCCTCCGCACCCGCGCCGAGGAACCGCTCAGGGATTCAGGCGGTTTCGAGTCATGGAGAATGGACATCCGTCTCTG...

CDS

20 records

下载 CDS FASTA
LOC131020533
ATGGAGTATCATCAGGTCATGGAGAATGGACATCCGTCTCTGGGGTTGGAAGATGGGCCGATTGATGTTGAGGATCTGCTTGTAGAACCCCAAGGCGGGCATCTGTCGATGGATAGTGTAATATGTTTCGATGAGAAGATCCCAAATAATGCAATGGGAATAGGACATGTTTCCCGCAGTTCTGGTGGGTCAGATACTGGTATTGCTCAGGAAGGGAAAGATATTCTCAATGGAGAAGTACTTAATGCAATGCCCATTGA...
LOC131020533
ATGGAGTATCATCAGGTCATGGAGAATGGACATCCGTCTCTGGGGTTGGAAGATGGGCCGATTGATGTTGAGGATCTGCTTGTAGAACCCCAAGGCGGGCATCTGTCGATGGATAGTGTAATATGTTTCGATGAGAAGATCCCAAATAATGCAATGGGAATAGGACATGTTTCCCGCAGTTCTGGTGGGTCAGATACTGGTATTGCTCAGGAAGGGAAAGATATTCTCAATGGAGAAGTACTTAATGCAATGCCCATTGA...

Protein

20 records

下载 Protein FASTA
XP_057805385.1
MEYHQVMENGHPSLGLEDGPIDVEDLLVEPQGGHLSMDSVICFDEKIPNNAMGIGHVSRSSGGSDTGIAQEGKDILNGEVLNAMPIEAEDGYFQLENDFCNMGDEYLLGVEFAESITNLDYGSSEGLQASASDCQIQVSTDGSDTGCRSDLYRTGDLRKCQNSHSVGSSKFGDTPSRRECGTLDGENPTVSPRSCTLRKSGKSQNSSSSSFLDVLSDENDGRFSRAGEMFFSPKTKRNYDFELTGQNGATNANEGQETLV...
XP_057805386.1
MEVMENGHPSLGLEDGPIDVEDLLVEPQGGHLSMDSVICFDEKIPNNAMGIGHVSRSSGGSDTGIAQEGKDILNGEVLNAMPIEAEDGYFQLENDFCNMGDEYLLGVEFAESITNLDYGSSEGLQASASDCQIQVSTDGSDTGCRSDLYRTGDLRKCQNSHSVGSSKFGDTPSRRECGTLDGENPTVSPRSCTLRKSGKSQNSSSSSFLDVLSDENDGRFSRAGEMFFSPKTKRNYDFELTGQNGATNANEGQETLVTAS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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