Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003667`

染色体: Chr04 坐标: 53114874-53118962 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003667`
名称	SmilChr04G003667
描述	synaptotagmin-3-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	53114874 - 53118962 / `-`

ID 对照

NCBI Gene ID	`LOC131020542`
GeneID	`131020542`
locus_tag	`-`
NCBI Name	`LOC131020542`
原始查询	`LOC131020542`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	synaptotagmin-3-like
产物	synaptotagmin-3-like
Arabidopsis	`AT5G04220` (SYTC) Calcium-dependent lipid-binding (CaLB domain) family protein [Source:NCBI gene (formerly Entrezgene);Acc:830301] identity=53.2; qcov=1; evalue=0; confidence=high
Rice	`Os06g0685300` (OsNTMC2T1.5) - identity=52.8; qcov=0.969; evalue=0; confidence=high
GO	GO:0005783 (endoplasmic reticulum); GO:0008289 (lipid binding)
KEGG	-
Pfam	PF00168 (C2); PF17047 (SMP_LBD)
InterPro	-
eggNOG	-
NR	GeneID:131020542

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057805412.1`
2	Nucleus	细胞核	0.00000	`XP_057805412.1`
3	Chromosome	染色体	0.00000	`XP_057805412.1`
4	Centromere	着丝粒	0.00000	`XP_057805412.1`
5	Chromatin	染色质	0.00000	`XP_057805412.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:53115048`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr4:53115054`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr4:53115102`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B53
`Chr4:53115290`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B127
`Chr4:53115521`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:53115551`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A10,B61,B73,C82
`Chr4:53115640`	`C`	`CA`	1bp_insertion	frameshift_variant	1	C39
`Chr4:53115640`	`C`	`CA`	1bp_insertion	CDS_variant	1	C39
`Chr4:53115647`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B67
`Chr4:53115665`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr4:53115686`	`AG`	`A`	1bp_deletion	frameshift_variant	2	B22,B27
`Chr4:53115686`	`AG`	`A`	1bp_deletion	CDS_variant	2	B22,B27

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805412.1

545 aa

272

545

SMP_LBD

PF17047 SMP_LBD 68-239 aa PF00168 C2 262-363 aa PF00168 C2 426-528 aa

XP_057805413.1

545 aa

272

545

SMP_LBD

PF17047 SMP_LBD 68-239 aa PF00168 C2 262-363 aa PF00168 C2 426-528 aa

XP_057805414.1

545 aa

272

545

SMP_LBD

PF17047 SMP_LBD 68-239 aa PF00168 C2 262-363 aa PF00168 C2 426-528 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805412.1`	Pfam	`PF17047`	SMP_LBD	Domain	68	239	9e-14	52.1	Synaptotagmin-like mitochondrial-lipid-binding domain
`XP_057805412.1`	Pfam	`PF00168`	C2	Domain	262	363	2.3e-46	157.0	C2 domain
`XP_057805412.1`	Pfam	`PF00168`	C2	Domain	426	528	2.3e-46	157.0	C2 domain
`XP_057805413.1`	Pfam	`PF17047`	SMP_LBD	Domain	68	239	9e-14	52.1	Synaptotagmin-like mitochondrial-lipid-binding domain
`XP_057805413.1`	Pfam	`PF00168`	C2	Domain	262	363	2.3e-46	157.0	C2 domain
`XP_057805413.1`	Pfam	`PF00168`	C2	Domain	426	528	2.3e-46	157.0	C2 domain
`XP_057805414.1`	Pfam	`PF17047`	SMP_LBD	Domain	68	239	9e-14	52.1	Synaptotagmin-like mitochondrial-lipid-binding domain
`XP_057805414.1`	Pfam	`PF00168`	C2	Domain	262	363	2.3e-46	157.0	C2 domain
`XP_057805414.1`	Pfam	`PF00168`	C2	Domain	426	528	2.3e-46	157.0	C2 domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057949431.1
TTGGACCAATTCTTGCAAGCGATCAATCAACCATATTTGTGGCATATTCTTGCGCAATCCAACCACCAACGCTCAAAACATAAAACAAAAAAAAATCCCTCAAACTAAACCTCCATTGCTCGCCACGTTCGAGTTCGTTGTCGCCATCAACAAGCTTCCAAATTCTTGAAACCAGTTAACGTCAACACCCGCCTATGAAAAACATCGCCGCTACGCCAGCTGGGAGGTGGAAAAATCCAGTCTTTTGATCAAACTTTTCC...

XM_057949430.1
TGGACCAATTCTTGCAAGCGATCAATCAACCATATTTGTGGCATATTCTTGCGCAATCCAACCACCAACGCTCAAAACATAAAACAAAAAAAAATCCCTCAAACTAAACCTCCATTGCTCGCCACGTTCGAGTTCGTTGTCGCCATCAACAAGCTTCCAAATTCTTGAAACCAGTTAACGTCAACACCCGCCTATGAAAAACATCGCCGCTACGCCAGCTGGGAGGTGGAAAAATCCAGTCTTTTGATCAAACGATTCTC...

CDS

3 records

下载 CDS FASTA

LOC131020542
ATGGGATTTCTTGATAGTTTGTTGGGTGTGATAGGATTTGGGTTTGGGATTCCGATAGGAATTGTTGTGGGATTCTTGGTGTTCATATACTTCGAGCCCACAGATGTAACCAAGGAGCTTGTAATTCAGTCGGTCAATGAATTTGATTCGAACTCTATAGTTGATATCGTGCCTAAGCTTCCACTATGGGTGATGAATCCAGATTATGAGAGAGTTGAATGGTTAAACAAAGTAATCCTTGAAGCATGGCCATATTTTGA...

Protein

3 records

下载 Protein FASTA

XP_057805412.1
MGFLDSLLGVIGFGFGIPIGIVVGFLVFIYFEPTDVTKELVIQSVNEFDSNSIVDIVPKLPLWVMNPDYERVEWLNKVILEAWPYFDKAACGIIKSTAEAIFAEYIGKFQIKSINFERLTLGSLPPKIHGLKPQDSNENELVLDLALRWAGDADIVLAIKLSSLQLAIQVVDIQISSATRVVLRPFVPSFPCFSSIAVSLMEKPKIDFGLRIMGGDIMSVPGVYQIVQEVVARQVAKLYLWPQTYEIDILDSSIGATKKP...

XP_057805413.1
MGFLDSLLGVIGFGFGIPIGIVVGFLVFIYFEPTDVTKELVIQSVNEFDSNSIVDIVPKLPLWVMNPDYERVEWLNKVILEAWPYFDKAACGIIKSTAEAIFAEYIGKFQIKSINFERLTLGSLPPKIHGLKPQDSNENELVLDLALRWAGDADIVLAIKLSSLQLAIQVVDIQISSATRVVLRPFVPSFPCFSSIAVSLMEKPKIDFGLRIMGGDIMSVPGVYQIVQEVVARQVAKLYLWPQTYEIDILDSSIGATKKP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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