Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003668`

染色体: Chr04 坐标: 53125773-53127231 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003668`
名称	SmilChr04G003668
描述	F-box/LRR-repeat/kelch-repeat protein At2g27520-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	53125773 - 53127231 / `+`

ID 对照

NCBI Gene ID	`LOC131020543`
GeneID	`131020543`
locus_tag	`-`
NCBI Name	`LOC131020543`
原始查询	`LOC131020543`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/LRR-repeat/kelch-repeat protein At2g27520-like
产物	F-box/LRR-repeat/kelch-repeat protein At2g27520-like
Arabidopsis	`AT3G16210` (AT3G16210) F-box family protein [Source:NCBI gene (formerly Entrezgene);Acc:820867] identity=27.6; qcov=0.713; evalue=9.96e-17; confidence=low
Rice	`Os09g0449600` (OsFbox490) - identity=24.8; qcov=0.732; evalue=6.36e-14; confidence=weak
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like); PF24750 (b-prop_At3g26010-like)
InterPro	-
eggNOG	-
NR	GeneID:131020543

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057805415.1`
2	Cytoplasm	细胞质	0.40000	`XP_057805415.1`
3	Cytosol	细胞质基质	0.20000	`XP_057805415.1`
4	Chromosome	染色体	0.00000	`XP_057805415.1`
5	Centromere	着丝粒	0.00000	`XP_057805415.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:53125826`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B52
`Chr4:53125826`	`TC`	`T`	1bp_deletion	CDS_variant	1	B52
`Chr4:53125871`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B117,B28,C77,C81
`Chr4:53125878`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A10,B56,C48,D7
`Chr4:53125913`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B120
`Chr4:53125939`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B120,B91,C36
`Chr4:53125946`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B120,B91,C36
`Chr4:53125964`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B120
`Chr4:53125994`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B120,B91,C36,C78
`Chr4:53125996`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B120,B91,C36
`Chr4:53126023`	`C`	`CT`	1bp_insertion	frameshift_variant	136	A1,A10,A11,A14,A15,A2,A21,A25,A9,B100,B102,B103,B104,B106,B11,B111,B112,B114,B115,B117,B12,B122,B123,B124,B126,B129,B132,B135,B139,B14,B140,B19,B20,B24,B26,B27,B3,B30,B31,B33,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B5,B50,B51,B55,B56,B57,B58,B59,B6,B60,B61,B63,B66,B70,B71,B73,B76,B77,B8,B80,B81,B85,B89,B90,B92,B93,B94,B98,B99,C1,C10,C15,C16,C17,C23,C28,C29,C34,C35,C36,C37,C39,C4,C42,C47,C48,C5,C51,C52,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C69,C70,C71,C75,C76,C79,C8,C82,C83,C85,C86,D1,D10,D3,D4,D6,D7,D8
`Chr4:53126025`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B120

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805415.1

407 aa

204

407

F-box

F-box-like

b-prop_At3g26010-like

FBA_3

FBA_1

PF00646 F-box 24-61 aa PF12937 F-box-like 25-59 aa PF24750 b-prop_At3g26010-like 102-301 aa PF08268 FBA_3 103-297 aa PF07734 FBA_1 106-251 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805415.1`	Pfam	`PF00646`	F-box	Domain	24	61	2.4e-07	31.1	F-box domain
`XP_057805415.1`	Pfam	`PF12937`	F-box-like	Domain	25	59	1.5e-06	28.6	F-box-like
`XP_057805415.1`	Pfam	`PF24750`	b-prop_At3g26010-like	Repeat	102	301	2.9e-09	37.2	F-box protein At3g26010-like, beta-propeller
`XP_057805415.1`	Pfam	`PF08268`	FBA_3	Repeat	103	297	1.3e-12	48.1	F-box associated beta propeller domain
`XP_057805415.1`	Pfam	`PF07734`	FBA_1	Repeat	106	251	1.1e-22	81.1	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057949432.1
CCCTCCTCCCTCCACACTTGGCTAGTTGGCTTGTTCACAAAATCAAAAATGCCTCCGAAAAGAAACCCCAATCGCTCCAAAGAAGCGGTGGAGATTAACGCCATGGCTGACTGCTTGTTTCCTCACGACATTATGATCGCCATTTTGACGCGACTGCCCGTCAAGTCTCTCTTCCGATTCAGGTGTGTCTGCAAGCCCTGGAGCTGCCTCGTCTTCAACCCGAGCTTCATAAAGCTCCACACCACTCTCTCTCTAGAATC...

CDS

1 records

下载 CDS FASTA

LOC131020543
ATGCCTCCGAAAAGAAACCCCAATCGCTCCAAAGAAGCGGTGGAGATTAACGCCATGGCTGACTGCTTGTTTCCTCACGACATTATGATCGCCATTTTGACGCGACTGCCCGTCAAGTCTCTCTTCCGATTCAGGTGTGTCTGCAAGCCCTGGAGCTGCCTCGTCTTCAACCCGAGCTTCATAAAGCTCCACACCACTCTCTCTCTAGAATCCCCGAGGCCGAGAGCTGCTCTAACCCATCTCCTCAACTGCCCTGTTTT...

Protein

1 records

下载 Protein FASTA

XP_057805415.1
MPPKRNPNRSKEAVEINAMADCLFPHDIMIAILTRLPVKSLFRFRCVCKPWSCLVFNPSFIKLHTTLSLESPRPRAALTHLLNCPVLSVHPNRVAPSDAPDLWLDHCNGMVCMTRPSYTQKIVLWNPATNLWKILPDSSARFGAAQMVSLGFGCNADGDDFKVVRIACMKGRKMKTEVEVYSSKSGSWTTIEDVGFKFTVMYPMNHVIVNGDPYWFACTVGRESENGEFDLLRFDATNMRFTVVALPRVDRLGQGPWPFV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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