Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003692`

染色体: Chr04 坐标: 53311835-53320488 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003692`
名称	SmilChr04G003692
描述	probable E3 ubiquitin-protein ligase ZFP1
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	53311835 - 53320488 / `+`

ID 对照

NCBI Gene ID	`LOC131020567`
GeneID	`131020567`
locus_tag	`-`
NCBI Name	`LOC131020567`
原始查询	`LOC131020567`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable E3 ubiquitin-protein ligase ZFP1
产物	probable E3 ubiquitin-protein ligase ZFP1
Arabidopsis	`AT2G37150` (AT2G37150) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818291] identity=35.2; qcov=1.02; evalue=2.62e-75; confidence=medium
Rice	`Os01g0159300` - identity=44.1; qcov=0.388; evalue=4.91e-41; confidence=low
GO	GO:0061630 (ubiquitin protein ligase activity)
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF12678 (zf-rbx1); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF17123 (zf-RING_11)
InterPro	-
eggNOG	-
NR	GeneID:131020567

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057805458.1`
2	Cytoplasm	细胞质	0.20000	`XP_057805458.1`
3	Chromosome	染色体	0.00000	`XP_057805458.1`
4	Centromere	着丝粒	0.00000	`XP_057805458.1`
5	Chromatin	染色质	0.00000	`XP_057805458.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:53318800`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B20,B93
`Chr4:53318836`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr4:53318872`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:53319224`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr4:53319239`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B100,B59
`Chr4:53319297`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr4:53319388`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A8
`Chr4:53319517`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B5,B77,C11,C69
`Chr4:53319848`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B104,B2,D11
`Chr4:53320298`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B140,B50,B53,C62,C71
`Chr4:53320397`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C45

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805458.1

544 aa

272

544

zf-rbx1

zf-RING_2

zf-RING_11

zf-C3HC4

zf-C3HC4_2

PF12678 zf-rbx1 486-530 aa PF13639 zf-RING_2 488-530 aa PF17123 zf-RING_11 489-516 aa PF00097 zf-C3HC4 489-529 aa PF13923 zf-C3HC4_2 489-529 aa

XP_057805460.1

544 aa

272

544

zf-rbx1

zf-RING_2

zf-RING_11

zf-C3HC4

zf-C3HC4_2

PF12678 zf-rbx1 486-530 aa PF13639 zf-RING_2 488-530 aa PF17123 zf-RING_11 489-516 aa PF00097 zf-C3HC4 489-529 aa PF13923 zf-C3HC4_2 489-529 aa

XP_057805461.1

544 aa

272

544

zf-rbx1

zf-RING_2

zf-RING_11

zf-C3HC4

zf-C3HC4_2

PF12678 zf-rbx1 486-530 aa PF13639 zf-RING_2 488-530 aa PF17123 zf-RING_11 489-516 aa PF00097 zf-C3HC4 489-529 aa PF13923 zf-C3HC4_2 489-529 aa

XP_057805462.1

544 aa

272

544

zf-rbx1

zf-RING_2

zf-RING_11

zf-C3HC4

zf-C3HC4_2

PF12678 zf-rbx1 486-530 aa PF13639 zf-RING_2 488-530 aa PF17123 zf-RING_11 489-516 aa PF00097 zf-C3HC4 489-529 aa PF13923 zf-C3HC4_2 489-529 aa

XP_057805463.1

544 aa

272

544

zf-rbx1

zf-RING_2

zf-RING_11

zf-C3HC4

zf-C3HC4_2

PF12678 zf-rbx1 486-530 aa PF13639 zf-RING_2 488-530 aa PF17123 zf-RING_11 489-516 aa PF00097 zf-C3HC4 489-529 aa PF13923 zf-C3HC4_2 489-529 aa

XP_057805464.1

544 aa

272

544

zf-rbx1

zf-RING_2

zf-RING_11

zf-C3HC4

zf-C3HC4_2

PF12678 zf-rbx1 486-530 aa PF13639 zf-RING_2 488-530 aa PF17123 zf-RING_11 489-516 aa PF00097 zf-C3HC4 489-529 aa PF13923 zf-C3HC4_2 489-529 aa

XP_057805465.1

544 aa

272

544

zf-rbx1

zf-RING_2

zf-RING_11

zf-C3HC4

zf-C3HC4_2

PF12678 zf-rbx1 486-530 aa PF13639 zf-RING_2 488-530 aa PF17123 zf-RING_11 489-516 aa PF00097 zf-C3HC4 489-529 aa PF13923 zf-C3HC4_2 489-529 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805458.1`	Pfam	`PF12678`	zf-rbx1	Domain	486	530	6e-09	36.7	RING-H2 zinc finger domain
`XP_057805458.1`	Pfam	`PF13639`	zf-RING_2	Domain	488	530	7e-14	52.5	Ring finger domain
`XP_057805458.1`	Pfam	`PF17123`	zf-RING_11	Domain	489	516	2.5e-06	27.8	RING-like zinc finger
`XP_057805458.1`	Pfam	`PF00097`	zf-C3HC4	Domain	489	529	6.5e-09	36.2	Zinc finger, C3HC4 type (RING finger)
`XP_057805458.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	489	529	2e-08	34.6	Zinc finger, C3HC4 type (RING finger)
`XP_057805460.1`	Pfam	`PF12678`	zf-rbx1	Domain	486	530	6e-09	36.7	RING-H2 zinc finger domain
`XP_057805460.1`	Pfam	`PF13639`	zf-RING_2	Domain	488	530	7e-14	52.5	Ring finger domain
`XP_057805460.1`	Pfam	`PF17123`	zf-RING_11	Domain	489	516	2.5e-06	27.8	RING-like zinc finger
`XP_057805460.1`	Pfam	`PF00097`	zf-C3HC4	Domain	489	529	6.5e-09	36.2	Zinc finger, C3HC4 type (RING finger)
`XP_057805460.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	489	529	2e-08	34.6	Zinc finger, C3HC4 type (RING finger)
`XP_057805461.1`	Pfam	`PF12678`	zf-rbx1	Domain	486	530	6e-09	36.7	RING-H2 zinc finger domain
`XP_057805461.1`	Pfam	`PF13639`	zf-RING_2	Domain	488	530	7e-14	52.5	Ring finger domain
`XP_057805461.1`	Pfam	`PF17123`	zf-RING_11	Domain	489	516	2.5e-06	27.8	RING-like zinc finger
`XP_057805461.1`	Pfam	`PF00097`	zf-C3HC4	Domain	489	529	6.5e-09	36.2	Zinc finger, C3HC4 type (RING finger)
`XP_057805461.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	489	529	2e-08	34.6	Zinc finger, C3HC4 type (RING finger)
`XP_057805462.1`	Pfam	`PF12678`	zf-rbx1	Domain	486	530	6e-09	36.7	RING-H2 zinc finger domain
`XP_057805462.1`	Pfam	`PF13639`	zf-RING_2	Domain	488	530	7e-14	52.5	Ring finger domain
`XP_057805462.1`	Pfam	`PF17123`	zf-RING_11	Domain	489	516	2.5e-06	27.8	RING-like zinc finger
`XP_057805462.1`	Pfam	`PF00097`	zf-C3HC4	Domain	489	529	6.5e-09	36.2	Zinc finger, C3HC4 type (RING finger)
`XP_057805462.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	489	529	2e-08	34.6	Zinc finger, C3HC4 type (RING finger)
`XP_057805463.1`	Pfam	`PF12678`	zf-rbx1	Domain	486	530	6e-09	36.7	RING-H2 zinc finger domain
`XP_057805463.1`	Pfam	`PF13639`	zf-RING_2	Domain	488	530	7e-14	52.5	Ring finger domain
`XP_057805463.1`	Pfam	`PF17123`	zf-RING_11	Domain	489	516	2.5e-06	27.8	RING-like zinc finger
`XP_057805463.1`	Pfam	`PF00097`	zf-C3HC4	Domain	489	529	6.5e-09	36.2	Zinc finger, C3HC4 type (RING finger)
`XP_057805463.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	489	529	2e-08	34.6	Zinc finger, C3HC4 type (RING finger)
`XP_057805464.1`	Pfam	`PF12678`	zf-rbx1	Domain	486	530	6e-09	36.7	RING-H2 zinc finger domain
`XP_057805464.1`	Pfam	`PF13639`	zf-RING_2	Domain	488	530	7e-14	52.5	Ring finger domain
`XP_057805464.1`	Pfam	`PF17123`	zf-RING_11	Domain	489	516	2.5e-06	27.8	RING-like zinc finger
`XP_057805464.1`	Pfam	`PF00097`	zf-C3HC4	Domain	489	529	6.5e-09	36.2	Zinc finger, C3HC4 type (RING finger)
`XP_057805464.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	489	529	2e-08	34.6	Zinc finger, C3HC4 type (RING finger)
`XP_057805465.1`	Pfam	`PF12678`	zf-rbx1	Domain	486	530	6e-09	36.7	RING-H2 zinc finger domain
`XP_057805465.1`	Pfam	`PF13639`	zf-RING_2	Domain	488	530	7e-14	52.5	Ring finger domain
`XP_057805465.1`	Pfam	`PF17123`	zf-RING_11	Domain	489	516	2.5e-06	27.8	RING-like zinc finger
`XP_057805465.1`	Pfam	`PF00097`	zf-C3HC4	Domain	489	529	6.5e-09	36.2	Zinc finger, C3HC4 type (RING finger)
`XP_057805465.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	489	529	2e-08	34.6	Zinc finger, C3HC4 type (RING finger)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XM_057949478.1
CACTAAATAACAAATGAGTCAAGTTTTGCAGGTAATGTACACGAAGAGAAACGTGATATATATTAGAATTCTTCACCGTTTCGTTTCAATTCGTCTCATTCTTTACCGTCTCTCTCTCTCCCCTCCCTCCCTCCCTGTTACCTTTTCATACACACCATTCGCCGTTGATCATTCATCGGAAACGTCCGATCACCGATTAACCCAGGGAGGGTTGCTGGTTGCATAATCTAATTGAAGATCTTTTGTAAGAATCTGTATAT...

XM_057949475.1
CAAGTTTTGCAGGTAATGTACACGAAGAGAAACGTGATATATATTAGAATTCTTCACCGTTTCGTTTCAATTCGTCTCATTCTTTACCGTCTCTCTCTCTCCCCTCCCTCCCTCCCTGTTACCTTTTCATACACACCATTCGCCGTTGATCATTCATCGGAAACGTCCGATCACCGATTAACCCAGGGAGGGTTGCTGGTTGCATAATCTAATTGAAGATCTTTTGTAAGAATCTGTATATCAAGCCTAATAGTTCAAAC...

CDS

7 records

下载 CDS FASTA

LOC131020567
ATGGGGCATAGAAACATGTTTAACACACCCCAAATTCTTGAGACTGAGAGTCATCAGGGACGGGATCATACTGAGCAACCCTACTTGCTTATGGGAAGGGCCAGTTCTTCTGAAAGCAGTTCTCTTGTTCAACCAACTCATCCTGGGCAGAACATAAGTATCAATGGTGGACCCTTTCCTCCCCCGTGGCCTGCTGCTCCTAGGTCACGGATAAACTCTTCATCAATTCCCCCTGTTGAATTGCCATGTTTTCAACAACA...

Protein

7 records

下载 Protein FASTA

XP_057805458.1
MGHRNMFNTPQILETESHQGRDHTEQPYLLMGRASSSESSSLVQPTHPGQNISINGGPFPPPWPAAPRSRINSSSIPPVELPCFQQQAPGPSRDPFLHQPAGGNFHMVPDNYSRPPSSSSLSGQTIPGAHGGFVNPATMSSSRGPYKRKSPSTPQLYDRGSTSRYYDVGSSSNLLLPADPWQQKQTTESYHMPWEYHPGHRVNSLSIGGEDTQRNVRSRTVVNQEPNLARTHMPSNSMNRSFSNCPADRSNLPDYLGQTS...

XP_057805460.1
MGHRNMFNTPQILETESHQGRDHTEQPYLLMGRASSSESSSLVQPTHPGQNISINGGPFPPPWPAAPRSRINSSSIPPVELPCFQQQAPGPSRDPFLHQPAGGNFHMVPDNYSRPPSSSSLSGQTIPGAHGGFVNPATMSSSRGPYKRKSPSTPQLYDRGSTSRYYDVGSSSNLLLPADPWQQKQTTESYHMPWEYHPGHRVNSLSIGGEDTQRNVRSRTVVNQEPNLARTHMPSNSMNRSFSNCPADRSNLPDYLGQTS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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