Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003717`

染色体: Chr04 坐标: 53477713-53481957 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003717`
名称	SmilChr04G003717
描述	bicyclo-germacrene synthase-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	53477713 - 53481957 / `+`

ID 对照

NCBI Gene ID	`LOC131020593`
GeneID	`131020593`
locus_tag	`-`
NCBI Name	`LOC131020593`
原始查询	`LOC131020593`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	bicyclo-germacrene synthase-like
产物	bicyclo-germacrene synthase-like
Arabidopsis	`AT5G23960` (TPS21) terpene synthase 21 [Source:NCBI gene (formerly Entrezgene);Acc:832461] identity=35; qcov=0.98; evalue=7.2e-106; confidence=medium
Rice	`Os03g0347900` - identity=38.9; qcov=0.909; evalue=4.59e-101; confidence=medium
GO	GO:0000287 (magnesium ion binding); GO:0010333 (terpene synthase activity); GO:0016102 (diterpenoid biosynthetic process)
KEGG	smil00909 (Sesquiterpenoid and triterpenoid biosynthesis - Salvia miltiorrhiza (redroot sage))
Pfam	PF01397 (Terpene_synth); PF03936 (Terpene_synth_C); PF19086 (Terpene_syn_C_2)
InterPro	-
eggNOG	-
NR	GeneID:131020593

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.60000	`XP_057805490.1`
2	Chloroplast	叶绿体	0.60000	`XP_057805490.1`
3	Cytoplasm	细胞质	0.40000	`XP_057805490.1`
4	Nucleus	细胞核	0.00000	`XP_057805490.1`
5	Chromosome	染色体	0.00000	`XP_057805490.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:53477826`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B68,B95,D11
`Chr4:53477832`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B80,C36,C5
`Chr4:53477835`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:53477850`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C54
`Chr4:53478236`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B70,C17
`Chr4:53478395`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C27
`Chr4:53478430`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A7,B110,B56,B96,C76
`Chr4:53478455`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A7,B110,B56,B96,C76
`Chr4:53478710`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B10,B75,C86
`Chr4:53478712`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C54
`Chr4:53478777`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:53478821`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805490.1

562 aa

281

562

Terpene_synth

Terpene_synth_C

Terpene_syn_C_2

PF01397 Terpene_synth 32-213 aa PF03936 Terpene_synth_C 273-506 aa PF19086 Terpene_syn_C_2 310-506 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805490.1`	Pfam	`PF01397`	Terpene_synth	Repeat	32	213	1.6e-54	185.2	Terpene synthase, N-terminal domain
`XP_057805490.1`	Pfam	`PF03936`	Terpene_synth_C	Domain	273	506	1.4e-73	247.9	Terpene synthase family, metal binding domain
`XP_057805490.1`	Pfam	`PF19086`	Terpene_syn_C_2	Domain	310	506	6.3e-38	131.2	Terpene synthase family 2, C-terminal metal binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057949507.1
ACCAACCATCTTTCACACACACACTAATAAGAAGAAGATTGTAAGATGGAAATATGTTCACAACCCGTTCCTGCAATCAAGAAAAATCATGTGAAGAAGTTAGATGAAATTCGCAAATCCGCGAAATTTCATCCATCCATTTGGGGTGACTACTTCCTACGATATGATTCAGATAAAACGAAAATCTCCGATGCTGAACGAGAAGAGCTCGCAAAGCAGAAAGAAAAGGTCAGGAAATTGTTAGCACAAACTCCAAACGA...

CDS

1 records

下载 CDS FASTA

LOC131020593
ATGGAAATATGTTCACAACCCGTTCCTGCAATCAAGAAAAATCATGTGAAGAAGTTAGATGAAATTCGCAAATCCGCGAAATTTCATCCATCCATTTGGGGTGACTACTTCCTACGATATGATTCAGATAAAACGAAAATCTCCGATGCTGAACGAGAAGAGCTCGCAAAGCAGAAAGAAAAGGTCAGGAAATTGTTAGCACAAACTCCAAACGATTCAACGCGTAAAATGGAACTCATCGATGCTATCCAGCGCCTCGG...

Protein

1 records

下载 Protein FASTA

XP_057805490.1
MEICSQPVPAIKKNHVKKLDEIRKSAKFHPSIWGDYFLRYDSDKTKISDAEREELAKQKEKVRKLLAQTPNDSTRKMELIDAIQRLGVEYHFQKEIEESLQSIHQNYKQQNSKDKDDDHLDPSSVALRFRLLRQQGYNVTSDVFRKFIDSEGNLAASLQDDVEGLLNLYEAAHLGTHGEEILDRAIELCSSRLQAAVHRLTNASLSKRVGEALETPIRKTLTRFGAREFIDVYEEDESHSEALLRFAKLDFNIVQKMHQR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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