Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003721`

染色体: Chr04 坐标: 53552965-53562177 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003721`
名称	SmilChr04G003721
描述	leucine carboxyl methyltransferase 1 homolog
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	53552965 - 53562177 / `-`

ID 对照

NCBI Gene ID	`LOC131020597`
GeneID	`131020597`
locus_tag	`-`
NCBI Name	`LOC131020597`
原始查询	`LOC131020597`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	leucine carboxyl methyltransferase 1 homolog
产物	leucine carboxyl methyltransferase 1 homolog
Arabidopsis	`AT1G02100` (SBI1) Leucine carboxyl methyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:837541] identity=75; qcov=0.968; evalue=0; confidence=high
Rice	`Os06g0140100` - identity=70.1; qcov=0.927; evalue=5.87e-160; confidence=high
GO	GO:0008168 (methyltransferase activity); GO:0032259 (methylation)
KEGG	-
Pfam	PF04072 (LCM)
InterPro	-
eggNOG	-
NR	GeneID:131020597

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057805494.1`
2	Nucleus	细胞核	1.00000	`XP_057805495.1`
3	Cytosol	细胞质基质	0.40000	`XP_057805494.1`
4	Chromosome	染色体	0.00000	`XP_057805495.1`
5	Centromere	着丝粒	0.00000	`XP_057805495.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:53554989`	`T`	`TC`	1bp_insertion	frameshift_variant	76	A1,A16,A18,A22,A3,A4,A5,A6,A8,B10,B107,B113,B12,B120,B124,B127,B128,B13,B133,B136,B137,B21,B22,B24,B25,B27,B28,B29,B36,B42,B43,B45,B46,B47,B48,B51,B55,B57,B58,B6,B63,B65,B66,B70,B74,B81,B83,B84,B85,B89,B98,C1,C10,C12,C18,C19,C21,C24,C34,C35,C4,C43,C5,C51,C63,C65,C68,C70,C72,C73,C79,C80,C83,C9,D5,D6
`Chr4:53555003`	`C`	`CTA`	2bp_insertion	frameshift_variant	150	A10,A13,A14,A16,A18,A2,A20,A21,A23,A24,A25,A3,A7,A8,B1,B10,B101,B102,B103,B104,B106,B108,B109,B110,B111,B112,B114,B115,B117,B118,B119,B120,B122,B124,B125,B126,B129,B13,B130,B134,B135,B14,B140,B15,B16,B17,B18,B19,B2,B22,B23,B28,B30,B32,B34,B35,B38,B39,B41,B46,B49,B5,B50,B51,B52,B53,B54,B55,B59,B6,B60,B62,B63,B66,B67,B68,B7,B70,B71,B72,B73,B74,B75,B77,B79,B80,B83,B87,B89,B91,B93,B94,B95,B98,B99,C12,C14,C15,C16,C17,C18,C19,C20,C23,C26,C27,C28,C3,C31,C32,C36,C4,C40,C42,C43,C44,C47,C48,C49,C5,C52,C53,C55,C57,C58,C60,C62,C65,C68,C71,C72,C76,C77,C79,C8,C80,C81,C82,C83,C84,C85,C86,C9,D11,D3,D4,D5,D6,D8,D9
`Chr4:53555015`	`TC`	`T`	1bp_deletion	frameshift_variant	113	A1,A10,A11,A14,A15,A2,A20,A21,A23,A24,A25,A5,A7,A9,B1,B100,B101,B102,B103,B105,B106,B108,B109,B111,B112,B121,B124,B125,B126,B129,B131,B132,B139,B18,B19,B20,B26,B3,B33,B34,B35,B37,B38,B39,B40,B41,B44,B49,B5,B53,B54,B60,B62,B64,B7,B76,B77,B78,B79,B8,B88,B9,B90,B91,B92,B94,B95,B97,B99,C10,C11,C13,C16,C2,C26,C30,C31,C33,C37,C38,C42,C44,C45,C46,C47,C48,C49,C50,C51,C52,C53,C54,C55,C56,C58,C60,C61,C62,C64,C66,C69,C74,C76,C78,C80,C82,C87,D10,D11,D2,D3,D4,D9
`Chr4:53555086`	`A`	`AC`	1bp_insertion	frameshift_variant	14	A10,A25,B115,B135,B6,B61,B63,B74,B80,B94,C17,C28,C67,C81
`Chr4:53555185`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B113,B58
`Chr4:53557526`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B106,B16,B49,B62,C79
`Chr4:53558656`	`AT`	`A`	1bp_deletion	frameshift_variant	10	B106,B132,B24,B37,B4,C24,C41,C57,C87,C9
`Chr4:53558864`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B106,B16,B49,B62
`Chr4:53560830`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B4,B61,C67
`Chr4:53560861`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B20,C14,D11
`Chr4:53562017`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B129,B134,B18,B67,C39

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805494.1

405 aa

202

405

LCM

PF04072 LCM 43-205 aa

XP_057805495.1

343 aa

172

343

LCM

PF04072 LCM 43-205 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805494.1`	Pfam	`PF04072`	LCM	Family	43	205	6.7e-22	79.0	Leucine carboxyl methyltransferase
`XP_057805495.1`	Pfam	`PF04072`	LCM	Family	43	205	4.4e-22	79.6	Leucine carboxyl methyltransferase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057949512.1
TTTCTTGTAGTTCTAAATTCTAAAGTAGTGTGTGAGCGCGAGAGAAAAAGAAGACAATTTTATCCGTGGCTCCTAATCTCACATCACATCATTCATTCCTCTTCCCAATCTCACATCATTCAAATTTCCTCCCGTTTCTGTGATTTTTGATGGCGAAACCGGCGCCCGATTGGCGGAGCAATAGATCGGCTGTTCAAGCCACAAATGACGACGCCTCCGCTAGCAAGCTGTCTTGCGTTAAAAAGGGATACATGAAAGAT...

XM_057949511.1
GTAGTTCTAAATTCTAAAGTAGTGTGTGAGCGCGAGAGAAAAAGAAGACAATTTTATCCGTGGCTCCTAATCTCACATCACATCATTCATTCCTCTTCCCAATCTCACATCATTCAAATTTCCTCCCGTTTCTGTGATTTTTGATGGCGAAACCGGCGCCCGATTGGCGGAGCAATAGATCGGCTGTTCAAGCCACAAATGACGACGCCTCCGCTAGCAAGCTGTCTTGCGTTAAAAAGGGATACATGAAAGATGACTAC...

CDS

2 records

下载 CDS FASTA

LOC131020597
ATGGCGAAACCGGCGCCCGATTGGCGGAGCAATAGATCGGCTGTTCAAGCCACAAATGACGACGCCTCCGCTAGCAAGCTGTCTTGCGTTAAAAAGGGATACATGAAAGATGACTACGTTCATCTGTTTGTTAAAAGGCCTGTCAGGAGATCCCCTATAATAAATCGTGGGTACTTTGCTCGTTATTCAGCACTCCGGAAGCTTCTCTATGAGTTTCTTGACTGCAAGATAAATGGGGAAGAGAAAGGCAAGAAGCAAAT...

Protein

2 records

下载 Protein FASTA

XP_057805494.1
MAKPAPDWRSNRSAVQATNDDASASKLSCVKKGYMKDDYVHLFVKRPVRRSPIINRGYFARYSALRKLLYEFLDCKINGEEKGKKQILSLGAGFDTTVFQLQDEGNMPHLYVELDFKEVTSKKAAIIENSTELRGKVGEAALISQEKGEVIGDHYKLLPVDLRDIQQLDDIISLAGMDPSLPTFIIAECVLIYLDPESSRAVVRWASRTFSTATFFLYEQIHPDDAFGQQMIRNLESRGCGLLSLYATPTLLAKEKLFID...

XP_057805495.1
MAKPAPDWRSNRSAVQATNDDASASKLSCVKKGYMKDDYVHLFVKRPVRRSPIINRGYFARYSALRKLLYEFLDCKINGEEKGKKQILSLGAGFDTTVFQLQDEGNMPHLYVELDFKEVTSKKAAIIENSTELRGKVGEAALISQEKGEVIGDHYKLLPVDLRDIQQLDDIISLAGMDPSLPTFIIAECVLIYLDPESSRAVVRWASRTFSTATFFLYEQIHPDDAFGQQMIRNLESRGCGLLSLYATPTLLAKEKLFID...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器