当前解析结果
SmilChr04G003737| 统一新 Gene ID | SmilChr04G003737 |
|---|---|
| 名称 | SmilChr04G003737 |
| 描述 | T-complex protein 1 subunit alpha-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 53674703 - 53681213 / - |
| NCBI Gene ID | LOC131020615 |
|---|---|
| GeneID | 131020615 |
| locus_tag | - |
| NCBI Name | LOC131020615 |
| 原始查询 | LOC131020615 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | T-complex protein 1 subunit alpha-like |
| 产物 | T-complex protein 1 subunit alpha-like |
| Arabidopsis | AT3G20050 (TCP-1)T-complex protein 1 alpha subunit [Source:NCBI gene (formerly Entrezgene);Acc:821544] identity=88.3; qcov=1; evalue=0; confidence=high |
| Rice | Os04g0551800- identity=86.6; qcov=1; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0005832 (chaperonin-containing T-complex); GO:0006457 (protein folding); GO:0016887 (ATP hydrolysis activity); GO:0051082 (GO:0051082); GO:0140662 (ATP-dependent protein folding chaperone) |
| KEGG | - |
| Pfam | PF00118 (Cpn60_TCP1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020615 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057805521.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057805521.1 |
| 3 | Nucleoplasm | 核质 | 0.20000 | XP_057805521.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057805522.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057805522.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:53675008 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B56,B78,B96,D11 |
Chr4:53675016 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C85 |
Chr4:53675016 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr4:53675145 |
GA |
G |
1bp_deletion | frameshift_variant | 157 | A1,A10,A11,A13,A14,A15,A19,A2,A20,A21,A22,A25,A3,A4,A5,A7,A8,A9,B100,B102,B103,B104,B105,B106,B111,B113,B115,B117,B120,B121,B122,B124,B126,B127,B128,B13,B130,B131,B132,B135,B136,B138,B140,B15,B16,B18,B19,B2,B21,B22,B23,B24,B27,B28,B29,B30,B31,B33,B36,B38,B39,B40,B41,B44,B45,B47,B48,B50,B51,B53,B55,B58,B6,B60,B61,B62,B63,B65,B66,B67,B68,B69,B7,B71,B74,B76,B78,B79,B8,B80,B83,B87,B89,B91,B94,B97,C10,C12,C13,C14,C20,C21,C23,C24,C26,C27,C28,C3,C30,C31,C34,C35,C36,C37,C38,C39,C40,C41,C43,C44,C45,C46,C47,C48,C50,C51,C53,C56,C57,C58,C59,C61,C62,C63,C65,C67,C7,C70,C73,C74,C75,C77,C79,C8,C81,C82,C83,C85,D10,D11,D2,D3,D5,D6,D7,D8,D9 |
Chr4:53675150 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B122,C48,D10,D2 |
Chr4:53675162 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr4:53675496 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr4:53675535 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr4:53676476 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B56,B78,B96 |
Chr4:53677032 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr4:53677044 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B110,B36,C5,C71 |
Chr4:53677979 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | C47,C61 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057805521.1PF00118
Cpn60_TCP1 31-521 aa
XP_057805522.1PF00118
Cpn60_TCP1 31-535 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057805521.1 |
Pfam | PF00118 |
Cpn60_TCP1 | Family | 31 | 521 | 7.8e-151 | 503.8 | TCP-1/cpn60 chaperonin family |
XP_057805522.1 |
Pfam | PF00118 |
Cpn60_TCP1 | Family | 31 | 535 | 2.1e-159 | 532.1 | TCP-1/cpn60 chaperonin family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。