Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003747`

染色体: Chr04 坐标: 53756915-53766766 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003747`
名称	SmilChr04G003747
描述	uncharacterized SmilChr04G003747
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	53756915 - 53766766 / `+`

ID 对照

NCBI Gene ID	`LOC131020624`
GeneID	`131020624`
locus_tag	`-`
NCBI Name	`LOC131020624`
原始查询	`LOC131020624`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Nucleotidyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828214]; symbol=MEE44; hit=AT4G00060; species=arabidopsis; confidence=medium
产物	Nucleotidyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828214]; symbol=MEE44; hit=AT4G00060; species=arabidopsis; confidence=medium
Arabidopsis	`AT4G00060` (MEE44) Nucleotidyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828214] identity=62.1; qcov=0.529; evalue=0; confidence=medium
Rice	`Os06g0669275` (OsNTP7) - identity=58.3; qcov=0.112; evalue=9.85e-50; confidence=weak
GO	GO:0003729 (mRNA binding); GO:0005730 (nucleolus); GO:0031123 (RNA 3'-end processing); GO:0031499 (TRAMP complex); GO:1990817 (poly(A) RNA polymerase activity)
KEGG	-
Pfam	PF01909 (NTP_transf_2); PF03828 (PAP_assoc); PF22600 (MTPAP-like_central)
InterPro	-
eggNOG	-
NR	GeneID:131020624

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057805538.1`
2	Cytoplasm	细胞质	0.20000	`XP_057805537.1`
3	Cytosol	细胞质基质	0.20000	`XP_057805537.1`
4	Chromosome	染色体	0.00000	`XP_057805537.1`
5	Centromere	着丝粒	0.00000	`XP_057805537.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:53757104`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B58,C4,C8
`Chr4:53757155`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B35,B41
`Chr4:53757187`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A22,C1,C36,C47
`Chr4:53757348`	`CG`	`C`	1bp_deletion	frameshift_variant	1	C24
`Chr4:53757348`	`CG`	`C`	1bp_deletion	CDS_variant	1	C24
`Chr4:53757380`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B52,C8
`Chr4:53757431`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B52,C8
`Chr4:53757551`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C10,D11
`Chr4:53757567`	`CGG`	`C`	2bp_deletion	frameshift_variant	1	B109
`Chr4:53757567`	`CGG`	`C`	2bp_deletion	CDS_variant	1	B109
`Chr4:53757585`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A20,B1,B7
`Chr4:53757848`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B101,B20,B71,B80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805537.1

1544 aa

772

1544

MTPAP-like_central

NTP_transf_2

PAP_assoc

PF22600 MTPAP-like_central 1197-1295 aa PF01909 NTP_transf_2 1199-1247 aa PF03828 PAP_assoc 1434-1483 aa

XP_057805538.1

1515 aa

758

1515

MTPAP-like_central

NTP_transf_2

PAP_assoc

PF22600 MTPAP-like_central 1168-1266 aa PF01909 NTP_transf_2 1170-1218 aa PF03828 PAP_assoc 1405-1454 aa

XP_057805539.1

1494 aa

747

1494

MTPAP-like_central

NTP_transf_2

PF22600 MTPAP-like_central 1197-1295 aa PF01909 NTP_transf_2 1199-1247 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805537.1`	Pfam	`PF22600`	MTPAP-like_central	Domain	1197	1295	1.2e-06	29.4	Poly(A) RNA polymerase, mitochondrial-like, central palm domain
`XP_057805537.1`	Pfam	`PF01909`	NTP_transf_2	Domain	1199	1247	1.3e-05	26.2	Nucleotidyltransferase domain
`XP_057805537.1`	Pfam	`PF03828`	PAP_assoc	Family	1434	1483	9.3e-07	29.8	Cid1 family poly A polymerase
`XP_057805538.1`	Pfam	`PF22600`	MTPAP-like_central	Domain	1168	1266	1.1e-06	29.5	Poly(A) RNA polymerase, mitochondrial-like, central palm domain
`XP_057805538.1`	Pfam	`PF01909`	NTP_transf_2	Domain	1170	1218	1.3e-05	26.2	Nucleotidyltransferase domain
`XP_057805538.1`	Pfam	`PF03828`	PAP_assoc	Family	1405	1454	9.4e-07	29.8	Cid1 family poly A polymerase
`XP_057805539.1`	Pfam	`PF22600`	MTPAP-like_central	Domain	1197	1295	1.1e-06	29.4	Poly(A) RNA polymerase, mitochondrial-like, central palm domain
`XP_057805539.1`	Pfam	`PF01909`	NTP_transf_2	Domain	1199	1247	1.3e-05	26.2	Nucleotidyltransferase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XR_009100730.1
CATTAATATATTTAATACAAACCCCCAAAGTTTTCGGTTTCCAATTTCCACCGTAACAATAGTAGTAATTGATGATCGCCGCTTCACTCGGCCACCAACACTCGCCGCATCGGAGAAATCCCCGCCGCCGAATATTCCGATGAGTTCGCGAGAGCAGCTCCTCGACTCTCTCACCGCCCACATCTCTCTCTACCACTCCAAAACCGCTGGCGACAGCCCCAACCCGAGTCCGAGCACCCGGCCAGCCGTACTCCGATGGT...

XM_057949556.1
ATTAATATATTTAATACAAACCCCCAAAGTTTTCGGTTTCCAATTTCCACCGTAACAATAGTAGTAATTGATGATCGCCGCTTCACTCGGCCACCAACACTCGCCGCATCGGAGAAATCCCCGCCGCCGAATATTCCGATGAGTTCGCGAGAGCAGCTCCTCGACTCTCTCACCGCCCACATCTCTCTCTACCACTCCAAAACCGCTGGCGACAGCCCCAACCCGAGTCCGAGCACCCGGCCAGCCGTACTCCGATGGTT...

CDS

3 records

下载 CDS FASTA

LOC131020624
ATGAGTTCGCGAGAGCAGCTCCTCGACTCTCTCACCGCCCACATCTCTCTCTACCACTCCAAAACCGCTGGCGACAGCCCCAACCCGAGTCCGAGCACCCGGCCAGCCGTACTCCGATGGTTCTCCTCGCTGTCGGTGCACCAGCGCCGCGCGCACCTGACGATTCTAGACGCGAACTTCGTCGCGATCCTCGTCCAGATGGAGGAGAAGCTCCAGTCCAGCGGCTGCGGCCGATTCATCATCCTCCCCGACCTCCCGCA...

Protein

3 records

下载 Protein FASTA

XP_057805537.1
MSSREQLLDSLTAHISLYHSKTAGDSPNPSPSTRPAVLRWFSSLSVHQRRAHLTILDANFVAILVQMEEKLQSSGCGRFIILPDLPQNDGSALPTLCYRKSEGLLLRSSESNGAEGAIRGSLELFSSAEGERGGEGGGFGRLDAACLNEGLVEDVSRFVDVADEITNGEFLRGGEEAEMAADWLELGWLKAKGYYSLEEFVVNRMEVSLRLAWLNSNSGKKRGVKLKERLSAAGVAANVFWRKKGCVDWWEKLDDSVKKK...

XP_057805538.1
MSSREQLLDSLTAHISLYHSKTAGDSPNPSPSTRPAVLRWFSSLSVHQRRAHLTILDANFVAILVQMEEKLQSSGCGRFIILPDLPQNDGSALPTLCYRKSEGLLLRSSESNGAEGAIRGSLELFSSAEGERGGEGGGFGRLDAACLNEGLVEDVSRFVDVADEITNGEFLRGGEEAEMAADWLELGWLKAKGYYSLEEFVVNRMEVSLRLAWLNSNSGKKRGVKLKERLSAAGVAANVFWRKKGCVDWWEKLDDSVKKK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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