Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001798`

染色体: Chr01 坐标: 32833863-32835956 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001798`
名称	SmilChr01G001798
描述	proteasome subunit alpha type-4-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	32833863 - 32835956 / `-`

ID 对照

NCBI Gene ID	`LOC131020625`
GeneID	`131020625`
locus_tag	`-`
NCBI Name	`LOC131020625`
原始查询	`LOC131020625`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	proteasome subunit alpha type-4-like
产物	proteasome subunit alpha type-4-like
Arabidopsis	`AT3G22110` (PAC1) 20S proteasome alpha subunit C1 [Source:NCBI gene (formerly Entrezgene);Acc:821774] identity=83.9; qcov=1; evalue=9.08e-160; confidence=high
Rice	`Os06g0167600` - identity=79.2; qcov=1.01; evalue=2.02e-153; confidence=high
GO	GO:0005634 (nucleus); GO:0005829 (cytosol); GO:0005839 (proteasome core complex); GO:0006511 (ubiquitin-dependent protein catabolic process); GO:0019773 (proteasome core complex, alpha-subunit complex)
KEGG	smil03050 (Proteasome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00227 (Proteasome); PF10584 (Proteasome_A_N)
InterPro	-
eggNOG	-
NR	GeneID:131020625

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057805542.1`
2	Cytoplasm	细胞质	1.00000	`XP_057805542.1`
3	Cytosol	细胞质基质	0.40000	`XP_057805542.1`
4	Nucleoplasm	核质	0.20000	`XP_057805542.1`
5	Chromosome	染色体	0.00000	`XP_057805542.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:32834072`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A16,B11
`Chr1:32834073`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C64,C66
`Chr1:32834142`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C56
`Chr1:32834343`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A16,A18,B11,B127
`Chr1:32834459`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B96
`Chr1:32834459`	`GC`	`G`	1bp_deletion	CDS_variant	1	B96
`Chr1:32834520`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr1:32834595`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:32834676`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A18,B127
`Chr1:32834762`	`GGC`	`G`	2bp_deletion	frameshift_variant	1	B44
`Chr1:32834762`	`GGC`	`G`	2bp_deletion	CDS_variant	1	B44
`Chr1:32834763`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A16,B11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805542.1

248 aa

124

248

Proteasome_A_N

Proteasome

PF10584 Proteasome_A_N 5-27 aa PF00227 Proteasome 30-215 aa

XP_057805550.1

248 aa

124

248

Proteasome_A_N

Proteasome

PF10584 Proteasome_A_N 5-27 aa PF00227 Proteasome 30-215 aa

XP_057805560.1

248 aa

124

248

Proteasome_A_N

Proteasome

PF10584 Proteasome_A_N 5-27 aa PF00227 Proteasome 30-215 aa

XP_057805568.1

248 aa

124

248

Proteasome_A_N

Proteasome

PF10584 Proteasome_A_N 5-27 aa PF00227 Proteasome 30-215 aa

XP_057805576.1

248 aa

124

248

Proteasome_A_N

Proteasome

PF10584 Proteasome_A_N 5-27 aa PF00227 Proteasome 30-215 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805542.1`	Pfam	`PF10584`	Proteasome_A_N	Family	5	27	1.7e-13	50.6	Proteasome subunit A N-terminal signature
`XP_057805542.1`	Pfam	`PF00227`	Proteasome	Domain	30	215	1e-59	202.1	Proteasome subunit
`XP_057805550.1`	Pfam	`PF10584`	Proteasome_A_N	Family	5	27	1.7e-13	50.6	Proteasome subunit A N-terminal signature
`XP_057805550.1`	Pfam	`PF00227`	Proteasome	Domain	30	215	1e-59	202.1	Proteasome subunit
`XP_057805560.1`	Pfam	`PF10584`	Proteasome_A_N	Family	5	27	1.7e-13	50.6	Proteasome subunit A N-terminal signature
`XP_057805560.1`	Pfam	`PF00227`	Proteasome	Domain	30	215	1e-59	202.1	Proteasome subunit
`XP_057805568.1`	Pfam	`PF10584`	Proteasome_A_N	Family	5	27	1.7e-13	50.6	Proteasome subunit A N-terminal signature
`XP_057805568.1`	Pfam	`PF00227`	Proteasome	Domain	30	215	1e-59	202.1	Proteasome subunit
`XP_057805576.1`	Pfam	`PF10584`	Proteasome_A_N	Family	5	27	1.7e-13	50.6	Proteasome subunit A N-terminal signature
`XP_057805576.1`	Pfam	`PF00227`	Proteasome	Domain	30	215	1e-59	202.1	Proteasome subunit

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057949559.1
TATATGTTTAAAAAAAGGACGAAAATAAGAAAAACAACATAAAATCAAACAAATAAAAGCCTTTCTAAAATTTTATTTTTTCTCTTTCTTTTCACTTTCGTCTCTGTCTTGAATTGTTCTGCTTCATATCTCTCACGTCTCCGGCCTCCCATTGCCCCCGCCCTCGCCGGCTTTCCCAGTCTCCCTCATCTCCTCTAAAATTAAATGCTTTATATATATGGATGAGAGAGAGAGAGCTGATAATCTTTTCGGCGTGAGCC...

XM_057949567.1
CGATTGCGCTTTTGACTGGTGAATGTAAGTGCGTACATATTAACATGTCTCGAAGATATGATAGCCGTACAACAATCTTTTCCCCGGAAGGGCGCCTCTACCAAGTTGAGTACGCGATGGAAGCTATTGGAAATGCAGGGAGTGCTATTGGGATTCTGGCTAAAGATGGAGTTGTGTTAGTCGGTGAAAAGAAGGTCATATCCAAACTACTTGAGACCTCCACATCAGTCGAGAAGATGTACAAGATTGATGACCATGTG...

CDS

5 records

下载 CDS FASTA

LOC131020625
ATGTCTCGAAGATATGATAGCCGTACAACAATCTTTTCCCCGGAAGGGCGCCTCTACCAAGTTGAGTACGCGATGGAAGCTATTGGAAATGCAGGGAGTGCTATTGGGATTCTGGCTAAAGATGGAGTTGTGTTAGTCGGTGAAAAGAAGGTCATATCCAAACTACTTGAGACCTCCACATCAGTCGAGAAGATGTACAAGATTGATGACCATGTGGCGTGTGCTGTGGCTGGGATCATGTCCGATGCCAATATCCTGAT...

Protein

5 records

下载 Protein FASTA

XP_057805542.1
MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILAKDGVVLVGEKKVISKLLETSTSVEKMYKIDDHVACAVAGIMSDANILINTARLQAQRYTFAYQEPMPLEQLVQSLCDTKQGYTQYGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNFSGWKAAAIGANNQAAQSILKQDYKDDITREEAVHLAIKVLSKTMDSTSLNSEKLELAEIFLSAGKVKFQMCPSDKVDKMLVKSGLTQPSADA

XP_057805550.1
MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILAKDGVVLVGEKKVISKLLETSTSVEKMYKIDDHVACAVAGIMSDANILINTARLQAQRYTFAYQEPMPLEQLVQSLCDTKQGYTQYGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNFSGWKAAAIGANNQAAQSILKQDYKDDITREEAVHLAIKVLSKTMDSTSLNSEKLELAEIFLSAGKVKFQMCPSDKVDKMLVKSGLTQPSADA

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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