Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003753`

染色体: Chr04 坐标: 53801712-53804937 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003753`
名称	SmilChr04G003753
描述	flavin-containing monooxygenase FMO GS-OX5-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	53801712 - 53804937 / `+`

ID 对照

NCBI Gene ID	`LOC131020628`
GeneID	`131020628`
locus_tag	`-`
NCBI Name	`LOC131020628`
原始查询	`LOC131020628`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	flavin-containing monooxygenase FMO GS-OX5-like
产物	flavin-containing monooxygenase FMO GS-OX5-like
Arabidopsis	`AT1G12160` (AT1G12160) Flavin-binding monooxygenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837768] identity=46.8; qcov=1.02; evalue=1.67e-140; confidence=high
Rice	`Os10g0553800` - identity=45.2; qcov=0.952; evalue=1.06e-119; confidence=high
GO	GO:0004499 (N,N-dimethylaniline monooxygenase activity); GO:0050660 (flavin adenine dinucleotide binding); GO:0050661 (NADP binding)
KEGG	-
Pfam	PF00743 (FMO-like); PF00890 (FAD_binding_2); PF01266 (DAO); PF01593 (Amino_oxidase); PF07992 (Pyr_redox_2); PF12831 (FAD_oxidored); PF13434 (Lys_Orn_oxgnase); PF13450 (NAD_binding_8); PF13454 (NAD_binding_9); PF13738 (Pyr_redox_3)
InterPro	-
eggNOG	-
NR	GeneID:131020628

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057805544.1`
2	Cytosol	细胞质基质	0.80000	`XP_057805544.1`
3	Nucleus	细胞核	0.00000	`XP_057805544.1`
4	Chromosome	染色体	0.00000	`XP_057805544.1`
5	Centromere	着丝粒	0.00000	`XP_057805544.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:53801818`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A18,A20,B99,C86,D6
`Chr4:53801841`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:53801845`	`ACC`	`A`	2bp_deletion	frameshift_variant	1	C32
`Chr4:53801845`	`ACC`	`A`	2bp_deletion	CDS_variant	1	C32
`Chr4:53801900`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B56,C8
`Chr4:53802157`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr4:53802260`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:53802297`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr4:53802304`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B4,D10
`Chr4:53802312`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A20
`Chr4:53802316`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D8
`Chr4:53802762`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B16,B7,B87,C23

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805544.1

441 aa

220

441

FMO-like

Pyr_redox_2

DAO

FAD_binding_2

FAD_oxidored

NAD_binding_9

NAD_binding_8

Amino_oxidase

Pyr_redox_3

Lys_Orn_oxgnase

FMO-like

PF00743 FMO-like 22-263 aa PF07992 Pyr_redox_2 22-311 aa PF01266 DAO 23-58 aa PF00890 FAD_binding_2 23-60 aa PF12831 FAD_oxidored 23-158 aa PF13454 NAD_binding_9 24-180 aa PF13450 NAD_binding_8 25-61 aa PF01593 Amino_oxidase 30-58 aa PF13738 Pyr_redox_3 90-274 aa PF13434 Lys_Orn_oxgnase 133-255 aa PF00743 FMO-like 267-407 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805544.1`	Pfam	`PF00743`	FMO-like	Family	22	263	2.5e-61	208.5	Flavin-binding monooxygenase-like
`XP_057805544.1`	Pfam	`PF07992`	Pyr_redox_2	Domain	22	311	9.5e-16	58.8	Pyridine nucleotide-disulphide oxidoreductase
`XP_057805544.1`	Pfam	`PF01266`	DAO	Domain	23	58	2.2e-13	51.2	FAD dependent oxidoreductase
`XP_057805544.1`	Pfam	`PF00890`	FAD_binding_2	Domain	23	60	3e-07	30.7	FAD binding domain
`XP_057805544.1`	Pfam	`PF12831`	FAD_oxidored	Family	23	158	8.3e-09	35.9	FAD dependent oxidoreductase
`XP_057805544.1`	Pfam	`PF13454`	NAD_binding_9	Domain	24	180	2.9e-07	31.3	FAD-NAD(P)-binding
`XP_057805544.1`	Pfam	`PF13450`	NAD_binding_8	Domain	25	61	5.6e-11	43.3	NAD(P)-binding Rossmann-like domain
`XP_057805544.1`	Pfam	`PF01593`	Amino_oxidase	Domain	30	58	4.1e-08	33.7	Flavin containing amine oxidoreductase
`XP_057805544.1`	Pfam	`PF13738`	Pyr_redox_3	Family	90	274	2.3e-20	73.8	Pyridine nucleotide-disulphide oxidoreductase
`XP_057805544.1`	Pfam	`PF13434`	Lys_Orn_oxgnase	Family	133	255	1.3e-06	28.5	L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase
`XP_057805544.1`	Pfam	`PF00743`	FMO-like	Family	267	407	2.5e-61	208.5	Flavin-binding monooxygenase-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057949561.1
AAGACATTGAAATCGATCCTTATCAAAATAGATTTGGCACAATTAATTTAATTTGTGCTATCATTGAACAAACCAGAATTCTTCAATGCCTCCTACCGATCTCACCGCCGGCCCCACGGCCGTCGACCACCTCACCGCGCCGCCACACAACGTGGCGGTGATTGGCGCCGGCGTGGCGGGGCTCGCGGCGGCGCGGGCCCTCAAAGCAGAAGGCCACCGCGTCGTTGTTTACGAGAAATCGGACAGACTCGGCGGCACCT...

CDS

1 records

下载 CDS FASTA

LOC131020628
ATGCCTCCTACCGATCTCACCGCCGGCCCCACGGCCGTCGACCACCTCACCGCGCCGCCACACAACGTGGCGGTGATTGGCGCCGGCGTGGCGGGGCTCGCGGCGGCGCGGGCCCTCAAAGCAGAAGGCCACCGCGTCGTTGTTTACGAGAAATCGGACAGACTCGGCGGCACCTGGGCTTACGACCCGCGAGTCGAGTCCGACCCGTTGAGCCTCGACCCGAATAGGGAGATCGTACACGGCAGCCTCTACCAATCGCT...

Protein

1 records

下载 Protein FASTA

XP_057805544.1
MPPTDLTAGPTAVDHLTAPPHNVAVIGAGVAGLAAARALKAEGHRVVVYEKSDRLGGTWAYDPRVESDPLSLDPNREIVHGSLYQSLRSNLPRQILGFSDYPFSTKTNRDPRTFPGHQEVLQFLNEFAAEFGLVESIRFGTEVVRVERDDLENDRWVVESRHQETNLNELFTAVVICNGHHTVPKVADFRGREKWPGKQIHSHNYRVPDPFEDLIVVVIGDGPSGTEISLEIAAVAKQVHLSSRSSEVRVSKMDYGDNMW...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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