当前解析结果
SmilChr04G003755| 统一新 Gene ID | SmilChr04G003755 |
|---|---|
| 名称 | SmilChr04G003755 |
| 描述 | Golgi SNAP receptor complex member 1-2 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 53820960 - 53825403 / - |
| NCBI Gene ID | LOC131020635 |
|---|---|
| GeneID | 131020635 |
| locus_tag | - |
| NCBI Name | LOC131020635 |
| 原始查询 | LOC131020635 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Golgi SNAP receptor complex member 1-2 |
| 产物 | Golgi SNAP receptor complex member 1-2 |
| Arabidopsis | AT2G45200 (GOS12)golgi snare 12 [Source:NCBI gene (formerly Entrezgene);Acc:819128] identity=90.1; qcov=0.987; evalue=4.13e-156; confidence=high |
| Rice | Os02g0126800- identity=72.4; qcov=0.987; evalue=2.05e-117; confidence=high |
| GO | GO:0000139 (Golgi membrane); GO:0005484 (SNAP receptor activity); GO:0005797 (Golgi medial cisterna); GO:0005801 (cis-Golgi network); GO:0006888 (endoplasmic reticulum to Golgi vesicle-mediated transport); GO:0006906 (vesicle fusion); GO:0031201 (SNARE complex) |
| KEGG | smil04130 (SNARE interactions in vesicular transport - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF12352 (V-SNARE_C); PF27017 (GOSR1_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020635 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057805561.1 |
| 2 | Trans-golgi network | Trans-golgi network | 0.80000 | XP_057805561.1 |
| 3 | Vesicle | 囊泡 | 0.40000 | XP_057805561.1 |
| 4 | Cytoplasmic vesicle | 细胞质囊泡 | 0.20000 | XP_057805561.1 |
| 5 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057805561.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:53821224 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B80 |
Chr4:53821434 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr4:53822117 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr4:53822139 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B61 |
Chr4:53822242 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B61 |
Chr4:53823542 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A18,B68,C71 |
Chr4:53823548 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D8 |
Chr4:53824997 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057805561.1PF27017
GOSR1_N 8-136 aa
PF12352
V-SNARE_C 146-210 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057805561.1 |
Pfam | PF27017 |
GOSR1_N | Domain | 8 | 136 | 1.8e-35 | 122.9 | GOSR1 N-terminal domain |
XP_057805561.1 |
Pfam | PF12352 |
V-SNARE_C | Domain | 146 | 210 | 2.6e-15 | 57.1 | Snare region anchored in the vesicle membrane C-terminus |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。