当前解析结果
SmilChr04G003764| 统一新 Gene ID | SmilChr04G003764 |
|---|---|
| 名称 | SmilChr04G003764 |
| 描述 | transketolase, chloroplastic-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 53883021 - 53886964 / - |
| NCBI Gene ID | LOC131020639 |
|---|---|
| GeneID | 131020639 |
| locus_tag | - |
| NCBI Name | LOC131020639 |
| 原始查询 | LOC131020639 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transketolase, chloroplastic-like |
| 产物 | transketolase%2C chloroplastic-like |
| Arabidopsis | AT2G45290 (AT2G45290)Transketolase [Source:NCBI gene (formerly Entrezgene);Acc:819137] identity=78.6; qcov=1.01; evalue=0; confidence=high |
| Rice | Os06g0133800 (OsTK)- identity=84.5; qcov=0.916; evalue=0; confidence=high |
| GO | GO:0004802 (transketolase activity); GO:0005829 (cytosol); GO:0006098 (pentose-phosphate shunt) |
| KEGG | smil00030 (Pentose phosphate pathway - Salvia miltiorrhiza (redroot sage)); smil00710 (Carbon fixation by Calvin cycle - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00456 (Transketolase_N); PF02779 (Transket_pyr); PF02780 (Transketolase_C); PF22613 (Transketolase_C_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020639 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057805565.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 1.00000 | XP_057805565.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057805565.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057805565.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057805565.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:53883156 |
AAG |
A |
2bp_deletion | frameshift_variant | 7 | A14,B2,B38,B39,B82,C26,D1 |
Chr4:53883160 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B56,B96 |
Chr4:53883220 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B6,C63,D8 |
Chr4:53883301 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
Chr4:53883403 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B6,C63,D8 |
Chr4:53883544 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B35,C46,C62 |
Chr4:53883724 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A1,B111,B89,C18 |
Chr4:53884054 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A2,B42,B43,C13,C54 |
Chr4:53884279 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B57,C37,C83,C84 |
Chr4:53884291 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A2,B42,B43,C13,C54 |
Chr4:53884344 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B41,D11 |
Chr4:53884475 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B72,D3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057805565.1PF00456
Transketolase_N 80-411 aa
PF02779
Transket_pyr 429-599 aa
PF22613
Transketolase_C_1 612-726 aa
PF02780
Transketolase_C 624-730 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057805565.1 |
Pfam | PF00456 |
Transketolase_N | Domain | 80 | 411 | 1.2e-152 | 508.4 | Transketolase, thiamine diphosphate binding domain |
XP_057805565.1 |
Pfam | PF02779 |
Transket_pyr | Domain | 429 | 599 | 1.8e-50 | 171.7 | Transketolase, pyrimidine binding domain |
XP_057805565.1 |
Pfam | PF22613 |
Transketolase_C_1 | Domain | 612 | 726 | 1e-40 | 139.1 | Transketolase-like TK C-terminal domain |
XP_057805565.1 |
Pfam | PF02780 |
Transketolase_C | Domain | 624 | 730 | 3.2e-10 | 40.7 | Transketolase, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。