当前解析结果
SmilChr04G003835| 统一新 Gene ID | SmilChr04G003835 |
|---|---|
| 名称 | SmilChr04G003835 |
| 描述 | K(+) efflux antiporter 2, chloroplastic-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 54390377 - 54400338 / - |
| NCBI Gene ID | LOC131020644 |
|---|---|
| GeneID | 131020644 |
| locus_tag | - |
| NCBI Name | LOC131020644 |
| 原始查询 | LOC131020644 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | K(+) efflux antiporter 2, chloroplastic-like |
| 产物 | K(+) efflux antiporter 2%2C chloroplastic-like |
| Arabidopsis | AT4G00630 (KEA2)K+ efflux antiporter 2 [Source:NCBI gene (formerly Entrezgene);Acc:825834] identity=65; qcov=1.01; evalue=0; confidence=high |
| Rice | Os04g0682800- identity=69.2; qcov=0.919; evalue=0; confidence=high |
| GO | GO:0006813 (potassium ion transport); GO:0009507 (chloroplast); GO:0015386 (potassium:proton antiporter activity); GO:0016020 (membrane); GO:1902600 (proton transmembrane transport) |
| KEGG | - |
| Pfam | PF00999 (Na_H_Exchanger); PF02254 (TrkA_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020644 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057805572.1 |
| 2 | Chloroplast membrane | 叶绿体膜 | 1.00000 | XP_057805572.1 |
| 3 | Chloroplast thylakoid | 类囊体 | 0.20000 | XP_057805572.1 |
| 4 | Chloroplast thylakoid membrane | 类囊体膜 | 0.20000 | XP_057805572.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057805572.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:54391050 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B122,B126,B136,B3,B71 |
Chr4:54392279 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B76 |
Chr4:54392437 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C46 |
Chr4:54393092 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A10,B118,B127 |
Chr4:54393176 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B108,B35,B55,C23 |
Chr4:54394724 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B127,B29,B54 |
Chr4:54394938 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr4:54395590 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B124 |
Chr4:54395631 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C70 |
Chr4:54396138 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B120,B30,C29,C76 |
Chr4:54396276 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A16,B108,B51,B82 |
Chr4:54396428 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A16,B51 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057805572.1PF00999
Na_H_Exchanger 602-970 aa
PF02254
TrkA_N 1002-1115 aa
XP_057805573.1PF00999
Na_H_Exchanger 602-970 aa
PF02254
TrkA_N 1002-1115 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057805572.1 |
Pfam | PF00999 |
Na_H_Exchanger | Domain | 602 | 970 | 1.4e-57 | 196.0 | Sodium/hydrogen exchanger, transmembrane |
XP_057805572.1 |
Pfam | PF02254 |
TrkA_N | Domain | 1002 | 1115 | 2.2e-21 | 77.0 | TrkA-N domain |
XP_057805573.1 |
Pfam | PF00999 |
Na_H_Exchanger | Domain | 602 | 970 | 1.4e-57 | 196.0 | Sodium/hydrogen exchanger, transmembrane |
XP_057805573.1 |
Pfam | PF02254 |
TrkA_N | Domain | 1002 | 1115 | 2.2e-21 | 77.0 | TrkA-N domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。