当前解析结果
SmilChr04G003772| 统一新 Gene ID | SmilChr04G003772 |
|---|---|
| 名称 | SmilChr04G003772 |
| 描述 | beta-amyrin synthase 2-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 53919160 - 53925931 / + |
| NCBI Gene ID | LOC131020649 |
|---|---|
| GeneID | 131020649 |
| locus_tag | - |
| NCBI Name | LOC131020649 |
| 原始查询 | LOC131020649 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | beta-amyrin synthase 2-like |
| 产物 | beta-amyrin synthase 2-like |
| Arabidopsis | AT1G78950 (BAS)Terpenoid cyclases family protein [Source:NCBI gene (formerly Entrezgene);Acc:844234] identity=72.4; qcov=0.87; evalue=0; confidence=high |
| Rice | Os02g0139700 (OsOSC2)- identity=55; qcov=0.866; evalue=0; confidence=high |
| GO | GO:0005811 (lipid droplet); GO:0016104 (triterpenoid biosynthetic process); GO:0042300 (beta-amyrin synthase activity) |
| KEGG | smil00909 (Sesquiterpenoid and triterpenoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00999 (Biosynthesis of various plant secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00432 (Prenyltrans); PF13243 (SQHop_cyclase_C); PF13249 (SQHop_cyclase_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020649 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.80000 | XP_057805581.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.60000 | XP_057805583.1 |
| 3 | Mitochondrion | 线粒体 | 0.20000 | XP_057805581.1 |
| 4 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057805581.1 |
| 5 | Mitochondrion membrane | 线粒体膜 | 0.20000 | XP_057805584.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:53920665 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B16,B56,B96 |
Chr4:53920718 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B37,B81,C52 |
Chr4:53920732 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B37,B81,C52 |
Chr4:53920792 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr4:53921858 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A19,B126,C3,C41 |
Chr4:53921862 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B4 |
Chr4:53921890 |
C |
CCA |
2bp_insertion | frameshift_variant | 2 | A3,B7 |
Chr4:53921890 |
C |
CCA |
2bp_insertion | CDS_variant | 2 | A3,B7 |
Chr4:53921906 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
Chr4:53921949 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B70,C26,C5,C76,D8 |
Chr4:53921960 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B127,B26,B37,B47,B8 |
Chr4:53922275 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B37,B81,C52 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057805581.1PF13249
SQHop_cyclase_N 99-392 aa
PF00432
Prenyltrans 142-190 aa
PF13243
SQHop_cyclase_C 411-750 aa
PF00432
Prenyltrans 505-657 aa
PF00432
Prenyltrans 618-717 aa
XP_057805582.1PF13249
SQHop_cyclase_N 99-392 aa
PF00432
Prenyltrans 142-190 aa
PF13243
SQHop_cyclase_C 411-749 aa
PF00432
Prenyltrans 504-656 aa
PF00432
Prenyltrans 617-716 aa
XP_057805583.1PF13249
SQHop_cyclase_N 99-392 aa
PF13243
SQHop_cyclase_C 411-692 aa
XP_057805584.1PF13249
SQHop_cyclase_N 99-393 aa
PF13243
SQHop_cyclase_C 411-533 aa
XP_057805585.1PF13249
SQHop_cyclase_N 99-393 aa
PF13243
SQHop_cyclase_C 411-533 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057805581.1 |
Pfam | PF13249 |
SQHop_cyclase_N | Repeat | 99 | 392 | 9e-39 | 134.1 | Squalene-hopene cyclase N-terminal domain |
XP_057805581.1 |
Pfam | PF00432 |
Prenyltrans | Repeat | 142 | 190 | 5.7e-06 | 26.7 | Prenyltransferase alpha-alpha toroid domain |
XP_057805581.1 |
Pfam | PF13243 |
SQHop_cyclase_C | Repeat | 411 | 750 | 1.9e-58 | 198.7 | Squalene-hopene cyclase C-terminal domain |
XP_057805581.1 |
Pfam | PF00432 |
Prenyltrans | Repeat | 505 | 657 | 5.7e-06 | 26.7 | Prenyltransferase alpha-alpha toroid domain |
XP_057805581.1 |
Pfam | PF00432 |
Prenyltrans | Repeat | 618 | 717 | 5.7e-06 | 26.7 | Prenyltransferase alpha-alpha toroid domain |
XP_057805582.1 |
Pfam | PF13249 |
SQHop_cyclase_N | Repeat | 99 | 392 | 9.1e-39 | 134.1 | Squalene-hopene cyclase N-terminal domain |
XP_057805582.1 |
Pfam | PF00432 |
Prenyltrans | Repeat | 142 | 190 | 4.9e-06 | 26.9 | Prenyltransferase alpha-alpha toroid domain |
XP_057805582.1 |
Pfam | PF13243 |
SQHop_cyclase_C | Repeat | 411 | 749 | 5.9e-59 | 200.4 | Squalene-hopene cyclase C-terminal domain |
XP_057805582.1 |
Pfam | PF00432 |
Prenyltrans | Repeat | 504 | 656 | 4.9e-06 | 26.9 | Prenyltransferase alpha-alpha toroid domain |
XP_057805582.1 |
Pfam | PF00432 |
Prenyltrans | Repeat | 617 | 716 | 4.9e-06 | 26.9 | Prenyltransferase alpha-alpha toroid domain |
XP_057805583.1 |
Pfam | PF13249 |
SQHop_cyclase_N | Repeat | 99 | 392 | 9.9e-39 | 134.0 | Squalene-hopene cyclase N-terminal domain |
XP_057805583.1 |
Pfam | PF13243 |
SQHop_cyclase_C | Repeat | 411 | 692 | 2.1e-48 | 165.7 | Squalene-hopene cyclase C-terminal domain |
XP_057805584.1 |
Pfam | PF13249 |
SQHop_cyclase_N | Repeat | 99 | 393 | 9.2e-35 | 120.9 | Squalene-hopene cyclase N-terminal domain |
XP_057805584.1 |
Pfam | PF13243 |
SQHop_cyclase_C | Repeat | 411 | 533 | 2e-14 | 54.0 | Squalene-hopene cyclase C-terminal domain |
XP_057805585.1 |
Pfam | PF13249 |
SQHop_cyclase_N | Repeat | 99 | 393 | 9.1e-35 | 120.9 | Squalene-hopene cyclase N-terminal domain |
XP_057805585.1 |
Pfam | PF13243 |
SQHop_cyclase_C | Repeat | 411 | 533 | 3.6e-18 | 66.4 | Squalene-hopene cyclase C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
6 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。