Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003779`

染色体: Chr04 坐标: 53983474-53990486 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003779`
名称	SmilChr04G003779
描述	protein transport Sec1a-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	53983474 - 53990486 / `+`

ID 对照

NCBI Gene ID	`LOC131020655`
GeneID	`131020655`
locus_tag	`-`
NCBI Name	`LOC131020655`
原始查询	`LOC131020655`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein transport Sec1a-like
产物	protein transport Sec1a-like
Arabidopsis	`AT1G02010` (SEC1A) secretory 1A [Source:NCBI gene (formerly Entrezgene);Acc:839288] identity=70.8; qcov=0.981; evalue=0; confidence=high
Rice	`Os06g0135900` - identity=62.5; qcov=0.779; evalue=0; confidence=high
GO	GO:0005886 (plasma membrane); GO:0006886 (intracellular protein transport); GO:0006904 (GO:0006904); GO:0016192 (vesicle-mediated transport); GO:0019905 (syntaxin binding); GO:0030141 (secretory granule)
KEGG	-
Pfam	PF00995 (Sec1)
InterPro	-
eggNOG	-
NR	GeneID:131020655

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057805603.1`
2	Cytosol	细胞质基质	0.80000	`XP_057805603.1`
3	Endocytic vesicle	Endocytic vesicle	0.60000	`XP_057805603.1`
4	Clathrin-coated vesicle	Clathrin-coated vesicle	0.60000	`XP_057805603.1`
5	Cytoplasmic vesicle	细胞质囊泡	0.40000	`XP_057805603.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:53985718`	`C`	`CAT`	2bp_insertion	frameshift_variant	1	B23
`Chr4:53985718`	`C`	`CAT`	2bp_insertion	CDS_variant	1	B23
`Chr4:53986761`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A16,B120,C70
`Chr4:53986764`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:53986897`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr4:53987057`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A20,B1,B7
`Chr4:53987059`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B52
`Chr4:53987393`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A20,B1,B7
`Chr4:53988124`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C38
`Chr4:53988952`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A20,B1,B7
`Chr4:53988987`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B129,B38,B39
`Chr4:53989554`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B57

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805603.1

671 aa

336

671

Sec1

PF00995 Sec1 43-654 aa

XP_057805604.1

670 aa

335

670

Sec1

PF00995 Sec1 43-653 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805603.1`	Pfam	`PF00995`	Sec1	Family	43	654	6.6e-128	429.1	Sec1 family
`XP_057805604.1`	Pfam	`PF00995`	Sec1	Family	43	653	7.3e-128	428.9	Sec1 family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057949620.1
TCTCTCTCTCTCTCTCATACACATACACGCATTGGAATTTTGAAAAGTAAAACCGTTGATCGCCGCCGGCGCCGCAAAATAGCTAGCTAGGAAGCATGCTGGTTCCCGATTCCGACTTCCTCCACGCCGGAAATGCCAAGACCTTCCGCCAAATCAGCCGCGATCGATTGTTGTACGAAATGCTCCGGACATCCAAATCAGGAGATTCGAGATCATCATGGAAGGTTCTCATCATGGATAAAGTTACAGTAAAAGTGATG...

XM_057949621.1
TCTCTCTCTCTCTCTCATACACATACACGCATTGGAATTTTGAAAAGTAAAACCGTTGATCGCCGCCGGCGCCGCAAAATAGCTAGCTAGGAAGCATGCTGGTTCCCGATTCCGACTTCCTCCACGCCGGAAATGCCAAGACCTTCCGCCAAATCAGCCGCGATCGATTGTTGTACGAAATGCTCCGGACATCCAAATCAGGAGATTCGAGATCATCATGGAAGGTTCTCATCATGGATAAAGTTACAGTAAAAGTGATG...

CDS

2 records

下载 CDS FASTA

LOC131020655
ATGCTGGTTCCCGATTCCGACTTCCTCCACGCCGGAAATGCCAAGACCTTCCGCCAAATCAGCCGCGATCGATTGTTGTACGAAATGCTCCGGACATCCAAATCAGGAGATTCGAGATCATCATGGAAGGTTCTCATCATGGATAAAGTTACAGTAAAAGTGATGTCATGCTCGTGCAAAATGTCTGATATCACAGAGCAAGGAATTTCATTGGTGGAAGACCTTTATAGAAGAAGACAACCTTTGCCTTCAATGGATGC...

Protein

2 records

下载 Protein FASTA

XP_057805603.1
MLVPDSDFLHAGNAKTFRQISRDRLLYEMLRTSKSGDSRSSWKVLIMDKVTVKVMSCSCKMSDITEQGISLVEDLYRRRQPLPSMDAIYFIQPSKENIIMLLSDMSGREPLYRKAYVYFSSPVPKHLLTHIKNDCSVVPRIAALREMNLEYFGIDNQGFITDHEKALEELFSDDAENSRRFDAYLNEMATRIATVFASLKECPFVHYRAAKGLDGTTVTTFGDLVPTKLAAAVWNIITTYKTLIPNFPQKETCELLIVDR...

XP_057805604.1
MLVPDSDFLHAGNAKTFRQISRDRLLYEMLRTSKSGDSRSSWKVLIMDKVTVKVMSCSCKMSDITEQGISLVEDLYRRRQPLPSMDAIYFIQPSKENIIMLLSDMSGREPLYRKAYVYFSSPVPKHLLTHIKNDCSVVPRIAALREMNLEYFGIDNQGFITDHEKALEELFSDDAENSRRFDAYLNEMATRIATVFASLKECPFVHYRAAKGLDGTTVTTFGDLVPTKLAAAVWNIITTYKTLIPNFPQKETCELLIVDR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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