Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003769`

染色体: Chr04 坐标: 53908108-53910232 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003769`
名称	SmilChr04G003769
描述	pentatricopeptide repeat-containing protein At2g45350, chloroplastic
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	53908108 - 53910232 / `-`

ID 对照

NCBI Gene ID	`LOC131020659`
GeneID	`131020659`
locus_tag	`-`
NCBI Name	`LOC131020659`
原始查询	`LOC131020659`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At2g45350, chloroplastic
产物	pentatricopeptide repeat-containing protein At2g45350%2C chloroplastic
Arabidopsis	`AT2G45350` (CRR4) Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819143] identity=55.3; qcov=0.971; evalue=0; confidence=high
Rice	`Os10g0400250` - identity=38.6; qcov=0.859; evalue=1.63e-112; confidence=medium
GO	GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF20431 (E_motif)
InterPro	-
eggNOG	-
NR	GeneID:131020659

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057805611.1`
2	Chloroplast	叶绿体	0.20000	`XP_057805611.1`
3	Nucleus	细胞核	0.00000	`XP_057805611.1`
4	Chromosome	染色体	0.00000	`XP_057805611.1`
5	Centromere	着丝粒	0.00000	`XP_057805611.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:53908273`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B99,C86
`Chr4:53908294`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B23
`Chr4:53908351`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C40
`Chr4:53908456`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C35,C64,C66
`Chr4:53908486`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B49,B79
`Chr4:53908494`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B52
`Chr4:53908513`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B26,B37,B47,B8
`Chr4:53908648`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B23
`Chr4:53908912`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B19,B93,C40
`Chr4:53908927`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:53909029`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B23
`Chr4:53909060`	`GC`	`G`	1bp_deletion	frameshift_variant	1	C72

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805611.1

624 aa

312

624

PPR

PPR_1

PPR

PPR_2

PPR

E_motif

PF01535 PPR 82-110 aa PF01535 PPR 116-146 aa PF01535 PPR 154-179 aa PF12854 PPR_1 180-207 aa PF01535 PPR 182-209 aa PF01535 PPR 215-245 aa PF01535 PPR 247-276 aa PF01535 PPR 278-307 aa PF01535 PPR 309-335 aa PF01535 PPR 385-409 aa PF01535 PPR 413-439 aa PF13041 PPR_2 413-458 aa PF01535 PPR 448-475 aa PF20431 E_motif 528-590 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805611.1`	Pfam	`PF01535`	PPR	Repeat	82	110	4.3e-72	234.2	PPR repeat
`XP_057805611.1`	Pfam	`PF01535`	PPR	Repeat	116	146	4.3e-72	234.2	PPR repeat
`XP_057805611.1`	Pfam	`PF01535`	PPR	Repeat	154	179	4.3e-72	234.2	PPR repeat
`XP_057805611.1`	Pfam	`PF12854`	PPR_1	Repeat	180	207	2.9e-33	114.0	PPR repeat
`XP_057805611.1`	Pfam	`PF01535`	PPR	Repeat	182	209	4.3e-72	234.2	PPR repeat
`XP_057805611.1`	Pfam	`PF01535`	PPR	Repeat	215	245	4.3e-72	234.2	PPR repeat
`XP_057805611.1`	Pfam	`PF01535`	PPR	Repeat	247	276	4.3e-72	234.2	PPR repeat
`XP_057805611.1`	Pfam	`PF01535`	PPR	Repeat	278	307	4.3e-72	234.2	PPR repeat
`XP_057805611.1`	Pfam	`PF01535`	PPR	Repeat	309	335	4.3e-72	234.2	PPR repeat
`XP_057805611.1`	Pfam	`PF01535`	PPR	Repeat	385	409	4.3e-72	234.2	PPR repeat
`XP_057805611.1`	Pfam	`PF01535`	PPR	Repeat	413	439	4.3e-72	234.2	PPR repeat
`XP_057805611.1`	Pfam	`PF13041`	PPR_2	Repeat	413	458	4.8e-67	222.6	PPR repeat family
`XP_057805611.1`	Pfam	`PF01535`	PPR	Repeat	448	475	4.3e-72	234.2	PPR repeat
`XP_057805611.1`	Pfam	`PF20431`	E_motif	Repeat	528	590	2.3e-21	76.5	E motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057949628.1
AACGGGCCATAGATTGAGCCCAATAAATATTAGAGCCCGATTCATTCGAATCCGACAACAAAATTGCCTGAAAAAAAAAATATCAAGAATTCAATCAAGATACGGTCTAAGCTTCTAACCAATGCTGCTCTCTGCAACTTCAGTTCAGCCATGGAGTTACCCTCTTCCCGCGTTGGACATTGCTTCAAAATGTAAAACCCAGATGGAGATAAATCAAATCCATGCAAATTTGATCACCACAGGCCATATCCACAACCCTT...

CDS

1 records

下载 CDS FASTA

LOC131020659
ATGCTGCTCTCTGCAACTTCAGTTCAGCCATGGAGTTACCCTCTTCCCGCGTTGGACATTGCTTCAAAATGTAAAACCCAGATGGAGATAAATCAAATCCATGCAAATTTGATCACCACAGGCCATATCCACAACCCTTCATTCACCTCAAAGACCATTCTCAAGCTCGCCTTTTCTCGACACAAACCGAATGTCGATTTCGCGAGATATCTCTTCTTCGATTTCAATTATAGAGACCCATTTCTATGGAACGCAATCAT...

Protein

1 records

下载 Protein FASTA

XP_057805611.1
MLLSATSVQPWSYPLPALDIASKCKTQMEINQIHANLITTGHIHNPSFTSKTILKLAFSRHKPNVDFARYLFFDFNYRDPFLWNAIMKSFSHGDEPNKAFQLFVLMLVRDILLDEYSFSLVLKSCSRLGLLSRGIQVHGLMLKLGFGSDLFLQNSLICFYVKCGFVQFGRQVFDRMGKKDSFSYNLMIDGYVKRGMVSSARQLFDRMPSEMKNLVSWNTMISGYLKVGNGFESAQELFDEMPQRDLVSWNLMIDCCAKNG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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