Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003858`

染色体: Chr04 坐标: 54518280-54524681 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003858`
名称	SmilChr04G003858
描述	acyl-CoA hydrolase 2
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	54518280 - 54524681 / `-`

ID 对照

NCBI Gene ID	`LOC131020677`
GeneID	`131020677`
locus_tag	`-`
NCBI Name	`LOC131020677`
原始查询	`LOC131020677`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	acyl-CoA hydrolase 2
产物	acyl-CoA hydrolase 2
Arabidopsis	`AT1G01710` (AT1G01710) acyl-CoA thioesterase II [Source:NCBI gene (formerly Entrezgene);Acc:839254] identity=68.1; qcov=1; evalue=0; confidence=high
Rice	`Os04g0558400` - identity=63.5; qcov=0.995; evalue=0; confidence=high
GO	GO:0006637 (acyl-CoA metabolic process); GO:0009062 (fatty acid catabolic process); GO:0047617 (fatty acyl-CoA hydrolase activity)
KEGG	smil00062 (Fatty acid elongation - Salvia miltiorrhiza (redroot sage)); smil01040 (Biosynthesis of unsaturated fatty acids - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00027 (cNMP_binding); PF02551 (Acyl_CoA_thio); PF13622 (4HBT_3); PF20789 (4HBT_3C)
InterPro	-
eggNOG	-
NR	GeneID:131020677

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Peroxisome	过氧化物酶体	1.00000	`XP_057805633.1`
2	Cytosol	细胞质基质	0.60000	`XP_057805633.1`
3	Nucleus	细胞核	0.00000	`XP_057805633.1`
4	Chromosome	染色体	0.00000	`XP_057805633.1`
5	Centromere	着丝粒	0.00000	`XP_057805633.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:54520077`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A19,C55,C80
`Chr4:54520678`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B67
`Chr4:54521344`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A3,B27,B87
`Chr4:54522948`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C15,C4
`Chr4:54522993`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A19,C55,C80
`Chr4:54523001`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr4:54523674`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr4:54524211`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B133,B97,C40
`Chr4:54524228`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A3,B27,B87
`Chr4:54524231`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805633.1

431 aa

216

431

cNMP_binding

4HBT_3

Acyl_CoA_thio

4HBT_3C

PF00027 cNMP_binding 36-116 aa PF13622 4HBT_3 158-239 aa PF02551 Acyl_CoA_thio 296-416 aa PF20789 4HBT_3C 310-416 aa

XP_057805634.1

429 aa

214

429

cNMP_binding

4HBT_3

Acyl_CoA_thio

4HBT_3C

PF00027 cNMP_binding 34-114 aa PF13622 4HBT_3 156-237 aa PF02551 Acyl_CoA_thio 294-414 aa PF20789 4HBT_3C 308-414 aa

XP_057805635.1

429 aa

214

429

cNMP_binding

4HBT_3

Acyl_CoA_thio

4HBT_3C

PF00027 cNMP_binding 34-114 aa PF13622 4HBT_3 156-237 aa PF02551 Acyl_CoA_thio 294-414 aa PF20789 4HBT_3C 308-414 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805633.1`	Pfam	`PF00027`	cNMP_binding	Domain	36	116	4.2e-12	46.6	Cyclic nucleotide-binding domain
`XP_057805633.1`	Pfam	`PF13622`	4HBT_3	Domain	158	239	2.3e-19	70.1	Acyl-CoA thioesterase N-terminal domain
`XP_057805633.1`	Pfam	`PF02551`	Acyl_CoA_thio	Domain	296	416	2.3e-36	125.3	Acyl-CoA thioesterase
`XP_057805633.1`	Pfam	`PF20789`	4HBT_3C	Domain	310	416	2.6e-26	93.2	Acyl-CoA thioesterase C-terminal domain
`XP_057805634.1`	Pfam	`PF00027`	cNMP_binding	Domain	34	114	4.2e-12	46.6	Cyclic nucleotide-binding domain
`XP_057805634.1`	Pfam	`PF13622`	4HBT_3	Domain	156	237	2.3e-19	70.1	Acyl-CoA thioesterase N-terminal domain
`XP_057805634.1`	Pfam	`PF02551`	Acyl_CoA_thio	Domain	294	414	2.3e-36	125.3	Acyl-CoA thioesterase
`XP_057805634.1`	Pfam	`PF20789`	4HBT_3C	Domain	308	414	2.6e-26	93.2	Acyl-CoA thioesterase C-terminal domain
`XP_057805635.1`	Pfam	`PF00027`	cNMP_binding	Domain	34	114	4.2e-12	46.6	Cyclic nucleotide-binding domain
`XP_057805635.1`	Pfam	`PF13622`	4HBT_3	Domain	156	237	2.3e-19	70.1	Acyl-CoA thioesterase N-terminal domain
`XP_057805635.1`	Pfam	`PF02551`	Acyl_CoA_thio	Domain	294	414	2.3e-36	125.3	Acyl-CoA thioesterase
`XP_057805635.1`	Pfam	`PF20789`	4HBT_3C	Domain	308	414	2.6e-26	93.2	Acyl-CoA thioesterase C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057949651.1
AACACACACTGTCTTGACGGCTGCAGCCGCGGTTAAAAAACATACGACACACGTGCCTTTTGACTTGAACGCAATCTATTGGCTCACGTTTCACGACGTAGTCGGAGCACAATTATTACCATATCGCGAGCCGCAGCAGATTACTCTCTCCGTCCTGACCACGCTTGATAAAATCCACATTCAATTTTCCGCGGCCCCTGATTGGCATAGAGTGATCCTCGCTGCTTAGCTGCCTAAATTTCGTAGCCATGAATCCCGAT...

XM_057949650.1
AACACACACTGTCTTGACGGCTGCAGCCGCGGTTAAAAAACATACGACACACGTGCCTTTTGACTTGAACGCAATCTATTGGCTCACGTTTCACGACGTAGTCGGAGCACAATTATTACCATATCGCGAGCCGCAGCAGATTACTCTCTCCGTCCTGACCACGCTTGATAAAATCCACATTCAATTTTCCGCGGCCCCTGATTGGCATAGAGTGATCCTCGCTGCTTAGCTGCCTAAATTTCGTAGCCATGAATCCCGAT...

CDS

3 records

下载 CDS FASTA

LOC131020677
ATGAATCCCGATTTAGTGATCGAGTTTTTGGGGTGTGTGCCGCTGCTCCAGACGCTGCCTAGCTCGTCTCTGAAGAAGATCGCCGAAGTCGTAGCCGTCAAGCGCTACGACCAAGGAGATTATGTAGTTCGTGAAGGAGAAGTGGCAGATGGAATTTATTTCGTATGGGAAGGAGAGGCTGAGGTCTGTGGATCTTTTCATTCTGATGATCAAAATCACGCTGACTATCATTTGAAGCGATACGACTTTTTTGGTCATGG...

Protein

3 records

下载 Protein FASTA

XP_057805633.1
MNPDLVAVIEFLGCVPLLQTLPSSSLKKIAEVVAVKRYDQGDYVVREGEVADGIYFVWEGEAEVCGSFHSDDQNHADYHLKRYDFFGHGMTSSNQSANVLALSKLTCLVLPNDQLYLLKSKSIWSADDTQEKRPLIEQILQLDPIEVNIFQGITLPDAPKFGKVFGGQFLGQALAAACKTVDCLKIVHSLHAYFLLLGDFNIPIIYEVHRVRDGKSFATRRVEAIQRGNVVFTLTASFQKEEQQFIHQVATMPSVPDPEK...

XP_057805634.1
MNPDLVIEFLGCVPLLQTLPSSSLKKIAEVVAVKRYDQGDYVVREGEVADGIYFVWEGEAEVCGSFHSDDQNHADYHLKRYDFFGHGMTSSNQSANVLALSKLTCLVLPNDQLYLLKSKSIWSADDTQEKRPLIEQILQLDPIEVNIFQGITLPDAPKFGKVFGGQFLGQALAAACKTVDCLKIVHSLHAYFLLLGDFNIPIIYEVHRVRDGKSFATRRVEAIQRGNVVFTLTASFQKEEQQFIHQVATMPSVPDPEKLL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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