Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003778`

染色体: Chr04 坐标: 53977822-53980143 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003778`
名称	SmilChr04G003778
描述	vestitone reductase-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	53977822 - 53980143 / `-`

ID 对照

NCBI Gene ID	`LOC131020694`
GeneID	`131020694`
locus_tag	`-`
NCBI Name	`LOC131020694`
原始查询	`LOC131020694`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	vestitone reductase-like
产物	vestitone reductase-like
Arabidopsis	`AT2G45400` (BEN1) NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819146] identity=47.9; qcov=1.01; evalue=6.59e-98; confidence=high
Rice	`Os08g0515900` - identity=39.4; qcov=0.852; evalue=3.08e-69; confidence=medium
GO	GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor)
KEGG	-
Pfam	PF01073 (3Beta_HSD); PF01370 (Epimerase); PF05368 (NmrA); PF07993 (NAD_binding_4); PF08659 (KR); PF13460 (NAD_binding_10); PF16363 (GDP_Man_Dehyd)
InterPro	-
eggNOG	-
NR	GeneID:131020694

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057805665.1`
2	Cytosol	细胞质基质	1.00000	`XP_057805665.1`
3	Nucleus	细胞核	0.00000	`XP_057805665.1`
4	Chromosome	染色体	0.00000	`XP_057805665.1`
5	Centromere	着丝粒	0.00000	`XP_057805665.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:53978105`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B59,C27,D6
`Chr4:53978259`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr4:53979238`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A23,B10,B46,B85,C50
`Chr4:53979332`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr4:53979362`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B107,B88
`Chr4:53979463`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A2,B50,B99,C74,C86
`Chr4:53979605`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	C46,C6,C62,C77
`Chr4:53979609`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	C46,C6,C62,C77
`Chr4:53979919`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A7,B111,C39,C47,C7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805665.1

331 aa

166

331

NmrA

Epimerase

NAD_binding_4

3Beta_HSD

GDP_Man_Dehyd

NAD_binding_10

PF05368 NmrA 7-131 aa PF08659 KR 8-136 aa PF01370 Epimerase 10-254 aa PF07993 NAD_binding_4 12-205 aa PF01073 3Beta_HSD 12-244 aa PF16363 GDP_Man_Dehyd 12-270 aa PF13460 NAD_binding_10 14-198 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805665.1`	Pfam	`PF05368`	NmrA	Family	7	131	5.8e-07	30.1	NmrA-like family
`XP_057805665.1`	Pfam	`PF08659`	KR	Family	8	136	1.7e-05	25.6	KR domain
`XP_057805665.1`	Pfam	`PF01370`	Epimerase	Family	10	254	3.1e-23	83.2	NAD dependent epimerase/dehydratase family
`XP_057805665.1`	Pfam	`PF07993`	NAD_binding_4	Family	12	205	1.1e-11	45.1	Male sterility protein
`XP_057805665.1`	Pfam	`PF01073`	3Beta_HSD	Family	12	244	8.1e-21	75.0	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057805665.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	12	270	2.1e-10	41.3	GDP-mannose 4,6 dehydratase
`XP_057805665.1`	Pfam	`PF13460`	NAD_binding_10	Domain	14	198	1.5e-09	38.7	NAD(P)H-binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057949682.1
CCACCATTAGGAGTTGAAAAAAGTAAATAATTCCGTGGGAAAATGACTGCAAATGAGCTCAATGACAAGAATATATACATCTGCTAGATCTCTCATCCATTAATATTATTAGAGAGAGAGAGATCTAGAGAGAGATGGGAGAGGAAAACAACAAAGGCAAAGTTTGTGTGACTGGTGGAAGTGGTTTTGTGGGATCATGGATGGTGAAAAGGCTTCTCCAACATGGCTATTATGTCAATACAACTATCAGAATGCATCCA...

CDS

1 records

下载 CDS FASTA

LOC131020694
ATGGGAGAGGAAAACAACAAAGGCAAAGTTTGTGTGACTGGTGGAAGTGGTTTTGTGGGATCATGGATGGTGAAAAGGCTTCTCCAACATGGCTATTATGTCAATACAACTATCAGAATGCATCCAGAGAAAGAAAGGGACATTAACTACCTGAGAAATCTGGAGGGCGCATCGGAAAGGCTAGCGGTTTTCGAAGCGGACCTCGACCGGCCGGCGAGCTTCGCGGCGGCGATCGAGGGCTGCGCGGGCGTGTTCCACAC...

Protein

1 records

下载 Protein FASTA

XP_057805665.1
MGEENNKGKVCVTGGSGFVGSWMVKRLLQHGYYVNTTIRMHPEKERDINYLRNLEGASERLAVFEADLDRPASFAAAIEGCAGVFHTAHPLDLEEREAEQVKIERVVNGAVGILQACVDAKTVKRVVYCSSVATAVFNEKVGGLDAIDESSWTDVEFLRSLGVFGGPYMVTKTLAEKMVLDFAERNGLDVVALLPTWIHGPFICPYLPDSVSIFMSLILGKKECYQRLVRTSVVHVDDVVRAHIHLFENPQAKGRYICSN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器