当前解析结果
SmilChr04G003777| 统一新 Gene ID | SmilChr04G003777 |
|---|---|
| 名称 | SmilChr04G003777 |
| 描述 | vestitone reductase-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 53967675 - 53976373 / - |
| NCBI Gene ID | LOC131020697 |
|---|---|
| GeneID | 131020697 |
| locus_tag | - |
| NCBI Name | LOC131020697 |
| 原始查询 | LOC131020697 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | vestitone reductase-like |
| 产物 | vestitone reductase-like |
| Arabidopsis | AT2G45400 (BEN1)NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819146] identity=47.5; qcov=1.01; evalue=7.71e-99; confidence=high |
| Rice | Os08g0515900- identity=39; qcov=0.857; evalue=1.35e-67; confidence=medium |
| GO | GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor) |
| KEGG | - |
| Pfam | PF01073 (3Beta_HSD); PF01370 (Epimerase); PF05368 (NmrA); PF07993 (NAD_binding_4); PF13460 (NAD_binding_10); PF16363 (GDP_Man_Dehyd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020697 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057805668.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057805668.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057805668.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057805668.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057805668.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:53967886 |
A |
AT |
1bp_insertion | frameshift_variant | 21 | A21,B107,B12,B13,B136,B26,B27,B3,B35,B45,B55,B67,B88,B91,B98,C61,C72,C73,C78,C83,D5 |
Chr4:53967915 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B59,C27,D6 |
Chr4:53968093 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B124,B71 |
Chr4:53975544 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B93,D3 |
Chr4:53975578 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C42,C82 |
Chr4:53975643 |
GT |
G |
1bp_deletion | frameshift_variant | 1 | B36 |
Chr4:53975643 |
GT |
G |
1bp_deletion | CDS_variant | 1 | B36 |
Chr4:53975748 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A22,A5,B82 |
Chr4:53976243 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A8,B101,B32,B36,C31 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057805668.1PF05368
NmrA 7-131 aa
PF01370
Epimerase 10-252 aa
PF07993
NAD_binding_4 12-198 aa
PF01073
3Beta_HSD 12-242 aa
PF16363
GDP_Man_Dehyd 12-268 aa
PF13460
NAD_binding_10 14-196 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057805668.1 |
Pfam | PF05368 |
NmrA | Family | 7 | 131 | 8.9e-07 | 29.5 | NmrA-like family |
XP_057805668.1 |
Pfam | PF01370 |
Epimerase | Family | 10 | 252 | 3.8e-22 | 79.6 | NAD dependent epimerase/dehydratase family |
XP_057805668.1 |
Pfam | PF07993 |
NAD_binding_4 | Family | 12 | 198 | 7.3e-12 | 45.7 | Male sterility protein |
XP_057805668.1 |
Pfam | PF01073 |
3Beta_HSD | Family | 12 | 242 | 1.7e-20 | 73.9 | 3-beta hydroxysteroid dehydrogenase/isomerase family |
XP_057805668.1 |
Pfam | PF16363 |
GDP_Man_Dehyd | Domain | 12 | 268 | 3.2e-10 | 40.7 | GDP-mannose 4,6 dehydratase |
XP_057805668.1 |
Pfam | PF13460 |
NAD_binding_10 | Domain | 14 | 196 | 5.1e-10 | 40.2 | NAD(P)H-binding |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。