Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003833`

染色体: Chr04 坐标: 54383779-54386159 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003833`
名称	SmilChr04G003833
描述	uncharacterized SmilChr04G003833
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	54383779 - 54386159 / `-`

ID 对照

NCBI Gene ID	`LOC131020734`
GeneID	`131020734`
locus_tag	`-`
NCBI Name	`LOC131020734`
原始查询	`LOC131020734`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:831107]; symbol=AT5G12320; hit=AT5G12320; species=arabidopsis; confidence=high
产物	ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:831107]; symbol=AT5G12320; hit=AT5G12320; species=arabidopsis; confidence=high
Arabidopsis	`AT5G12320` (AT5G12320) ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:831107] identity=58.8; qcov=1; evalue=8.16e-60; confidence=high
Rice	`Os09g0513000` (OsBIANK1) - identity=38.1; qcov=0.634; evalue=1.48e-14; confidence=low
GO	GO:0005515 (protein binding); GO:0034587 (piRNA processing); GO:0071546 (pi-body)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5)
InterPro	-
eggNOG	-
NR	GeneID:131020734

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057805728.1`
2	Cytoplasm	细胞质	1.00000	`XP_057805728.1`
3	Chromosome	染色体	0.00000	`XP_057805728.1`
4	Centromere	着丝粒	0.00000	`XP_057805728.1`
5	Chromatin	染色质	0.00000	`XP_057805728.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:54384069`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B76
`Chr4:54384123`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A19,C11,C55,C69
`Chr4:54384147`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B53
`Chr4:54384301`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:54385154`	`G`	`A`	EMS_canonical_SNV	stop_gained	67	A10,A13,A14,A20,A25,A3,A6,B100,B101,B103,B110,B113,B114,B13,B133,B134,B138,B140,B15,B2,B25,B31,B38,B39,B4,B46,B49,B53,B58,B59,B6,B61,B65,B67,B68,B74,B78,B79,B80,B95,B97,B98,B99,C22,C24,C28,C3,C32,C39,C40,C50,C54,C57,C67,C68,C71,C72,C73,C79,C8,C81,C84,C86,D1,D10,D3,D8
`Chr4:54386055`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805728.1

153 aa

153

Ank_2

Ank_4

Ank_5

Ank_3

Ank

Ank_4

Ank_5

Ank_3

Ank_2

Ank

Ank_4

PF12796 Ank_2 24-114 aa PF13637 Ank_4 26-73 aa PF13857 Ank_5 42-83 aa PF13606 Ank_3 52-81 aa PF00023 Ank 53-83 aa PF13637 Ank_4 64-106 aa PF13857 Ank_5 72-126 aa PF13606 Ank_3 86-113 aa PF12796 Ank_2 86-143 aa PF00023 Ank 87-116 aa PF13637 Ank_4 90-135 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805728.1`	Pfam	`PF12796`	Ank_2	Repeat	24	114	4.3e-27	95.2	Ankyrin repeats (3 copies)
`XP_057805728.1`	Pfam	`PF13637`	Ank_4	Repeat	26	73	2e-27	95.3	Ankyrin repeats (many copies)
`XP_057805728.1`	Pfam	`PF13857`	Ank_5	Repeat	42	83	1.2e-18	67.7	Ankyrin repeats (many copies)
`XP_057805728.1`	Pfam	`PF13606`	Ank_3	Repeat	52	81	3.6e-20	70.4	Ankyrin repeat
`XP_057805728.1`	Pfam	`PF00023`	Ank	Repeat	53	83	2.2e-22	78.6	Ankyrin repeat
`XP_057805728.1`	Pfam	`PF13637`	Ank_4	Repeat	64	106	2e-27	95.3	Ankyrin repeats (many copies)
`XP_057805728.1`	Pfam	`PF13857`	Ank_5	Repeat	72	126	1.2e-18	67.7	Ankyrin repeats (many copies)
`XP_057805728.1`	Pfam	`PF13606`	Ank_3	Repeat	86	113	3.6e-20	70.4	Ankyrin repeat
`XP_057805728.1`	Pfam	`PF12796`	Ank_2	Repeat	86	143	4.3e-27	95.2	Ankyrin repeats (3 copies)
`XP_057805728.1`	Pfam	`PF00023`	Ank	Repeat	87	116	2.2e-22	78.6	Ankyrin repeat
`XP_057805728.1`	Pfam	`PF13637`	Ank_4	Repeat	90	135	2e-27	95.3	Ankyrin repeats (many copies)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057949745.1
CTGTTGCTGCATTGCAGCATTTCGCTTACACAGAAACACTACCAAACTCAGAATGGGAGCGCCGGTGAACTCAGCGGAGCCGCCGCCGCCGCAAGATGCGGCGGCGGAGACCGTCGACGCTTTGCTAGAGGCTGCTAGGTATGATGATATAGACGATCTCATGAGTATAGCATCTGCTGGTGTTTCTCTGGATTCGAAGGATTCGGAAGGCCGCACAGCATTACATATGGCTTCAGCAAATGGGCATCTTGACATTGTTG...

CDS

1 records

下载 CDS FASTA

LOC131020734
ATGGGAGCGCCGGTGAACTCAGCGGAGCCGCCGCCGCCGCAAGATGCGGCGGCGGAGACCGTCGACGCTTTGCTAGAGGCTGCTAGGTATGATGATATAGACGATCTCATGAGTATAGCATCTGCTGGTGTTTCTCTGGATTCGAAGGATTCGGAAGGCCGCACAGCATTACATATGGCTTCAGCAAATGGGCATCTTGACATTGTTGATTATCTTATACGAAATGGGGCGGATGTTAATGCTTATAACTTGGAGAAGAA...

Protein

1 records

下载 Protein FASTA

XP_057805728.1
MGAPVNSAEPPPPQDAAAETVDALLEAARYDDIDDLMSIASAGVSLDSKDSEGRTALHMASANGHLDIVDYLIRNGADVNAYNLEKNTPLHWASLNGHIEVVKRLILSGADISSLNSHEKSPVDEAVSRGKMDVIDAINEAAAQVDLARTQVS

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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