Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003920`

染色体: Chr04 坐标: 54883753-54888362 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003920`
名称	SmilChr04G003920
描述	mitochondrial adenine nucleotide transporter ADNT1-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	54883753 - 54888362 / `-`

ID 对照

NCBI Gene ID	`LOC131020782`
GeneID	`131020782`
locus_tag	`-`
NCBI Name	`LOC131020782`
原始查询	`LOC131020782`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	mitochondrial adenine nucleotide transporter ADNT1-like
产物	mitochondrial adenine nucleotide transporter ADNT1-like
Arabidopsis	`AT4G01100` (ADNT1) adenine nucleotide transporter 1 [Source:NCBI gene (formerly Entrezgene);Acc:827899] identity=84.9; qcov=0.922; evalue=0; confidence=high
Rice	`Os05g0585900` - identity=84.2; qcov=0.922; evalue=2.38e-179; confidence=high
GO	GO:0055085 (transmembrane transport)
KEGG	-
Pfam	PF00153 (Mito_carr)
InterPro	-
eggNOG	-
NR	GeneID:131020782

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057805784.1`
2	Mitochondrion membrane	线粒体膜	1.00000	`XP_057805784.1`
3	Mitochondrion inner membrane	线粒体内膜	1.00000	`XP_057805784.1`
4	Nucleus	细胞核	0.00000	`XP_057805784.1`
5	Chromosome	染色体	0.00000	`XP_057805784.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:54884135`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B103,B111,B84,C36,D4
`Chr4:54884281`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C49,D9
`Chr4:54884358`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C66
`Chr4:54884413`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B106,B124,B138,B26,C58
`Chr4:54884474`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C16,C33
`Chr4:54885335`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C27,D9
`Chr4:54886851`	`G`	`A`	EMS_canonical_SNV	stop_gained	15	A10,A13,A18,B108,B114,B17,B37,B72,B93,C11,C25,C30,C31,C40,C65
`Chr4:54886928`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C31
`Chr4:54887099`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A9,B134,B16
`Chr4:54887235`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B46,C57,C60

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805784.1

354 aa

177

354

Mito_carr

PF00153 Mito_carr 38-125 aa PF00153 Mito_carr 141-233 aa PF00153 Mito_carr 244-346 aa

XP_057805785.1

309 aa

154

309

Mito_carr

PF00153 Mito_carr 30-80 aa PF00153 Mito_carr 96-188 aa PF00153 Mito_carr 199-301 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805784.1`	Pfam	`PF00153`	Mito_carr	Repeat	38	125	5.2e-84	276.9	Mitochondrial carrier protein
`XP_057805784.1`	Pfam	`PF00153`	Mito_carr	Repeat	141	233	5.2e-84	276.9	Mitochondrial carrier protein
`XP_057805784.1`	Pfam	`PF00153`	Mito_carr	Repeat	244	346	5.2e-84	276.9	Mitochondrial carrier protein
`XP_057805785.1`	Pfam	`PF00153`	Mito_carr	Repeat	30	80	6.9e-72	238.0	Mitochondrial carrier protein
`XP_057805785.1`	Pfam	`PF00153`	Mito_carr	Repeat	96	188	6.9e-72	238.0	Mitochondrial carrier protein
`XP_057805785.1`	Pfam	`PF00153`	Mito_carr	Repeat	199	301	6.9e-72	238.0	Mitochondrial carrier protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057949801.1
AAAGCCAAAAACGGCCTCCAATGTTTTAGGGTACAACCAATAAAGCGAGGGTACAATCGCAGCGAATGAGAGCTCTATAACTGTAATAAATTATCGTTAAAAATCAGGTGAGAAAGTCGAGCAAAAGAAGCTCACTCTTTTTTTCATTTCACACAAACGCCGTCACTCCACACACAAAAACACACTCACTGCGTGCCGCATTCGCCTTCGCCCCCCAACCTCCCGTCTCTCCGCCCCCACAGCCCGCCGGCGCCGCGTCA...

XM_057949802.1
GAACCGCTGTAGCTCCGTTGGAACGTCTGAAAATTCTGCTTCAGTTGCAAGTATGACGACGTGGTATATACATGGGTTGTGATTTGATGTACTCATGGGTTGATAAATATATTTTGAGGACATACTCATGGGTTGGTAACTTGGTTCAAAATTCACAGAATATAAAGTACAATGGTACTATTCAAGGGTTGAAGTACATATGGAGAACTGAGGGATTTAGGGGCTTGTTCAAAGGGAATGGCACTAATTGTGCTCGAATT...

CDS

2 records

下载 CDS FASTA

LOC131020782
ATGGCGTCGGAGGATGTGAAGACGAGTGAATCGGCGGTGTCGAAGATTGTTAATTTGGCGGAGGAGGCGAAGCTCGCGAAGGAGGAAATCAAGCCTACTAAGTATCAAGTTTATAGTATCTGCAAATCTCTCATCGCTGGTGGCGTCGCTGGAGGAGTGTCGCGAACCGCTGTAGCTCCGTTGGAACGTCTGAAAATTCTGCTTCAGGTTCAAAATTCACAGAATATAAAGTACAATGGTACTATTCAAGGGTTGAAGTA...

LOC131020782
ATGGGTTGTGATTTGATGTACTCATGGGTTGATAAATATATTTTGAGGACATACTCATGGGTTGGTAACTTGGTTCAAAATTCACAGAATATAAAGTACAATGGTACTATTCAAGGGTTGAAGTACATATGGAGAACTGAGGGATTTAGGGGCTTGTTCAAAGGGAATGGCACTAATTGTGCTCGAATTGTCCCAAATTCAGCTGTAAAATTCTTCAGCTATGAGCAAGCATCCAAGGGTATATTATATTTATATCAGCA...

Protein

2 records

下载 Protein FASTA

XP_057805784.1
MASEDVKTSESAVSKIVNLAEEAKLAKEEIKPTKYQVYSICKSLIAGGVAGGVSRTAVAPLERLKILLQVQNSQNIKYNGTIQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILYLYQQQTGNEDAQLTPVLRLGAGACAGIIAMSATYPMDMVRGRITVQTETSPYQYRGMFHALSTVLREEGFRALYKGWLPSVIGVVPYVGLNFAVYESLKDWLIKSKAFGLVEDNELGVATRLACGAAAGTVG...

XP_057805785.1
MGCDLMYSWVDKYILRTYSWVGNLVQNSQNIKYNGTIQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILYLYQQQTGNEDAQLTPVLRLGAGACAGIIAMSATYPMDMVRGRITVQTETSPYQYRGMFHALSTVLREEGFRALYKGWLPSVIGVVPYVGLNFAVYESLKDWLIKSKAFGLVEDNELGVATRLACGAAAGTVGQTVAYPLDVIRRRMQMVGWNNASSIVTGDGRSKASLEYTGMVDAF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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