Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003951`

染色体: Chr04 坐标: 55075070-55077258 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003951`
名称	SmilChr04G003951
描述	E3 ubiquitin-protein ligase SINAT3-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	55075070 - 55077258 / `-`

ID 对照

NCBI Gene ID	`LOC131020811`
GeneID	`131020811`
locus_tag	`-`
NCBI Name	`LOC131020811`
原始查询	`LOC131020811`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	E3 ubiquitin-protein ligase SINAT3-like
产物	E3 ubiquitin-protein ligase SINAT3-like
Arabidopsis	`AT3G61790` (AT3G61790) Protein with RING/U-box and TRAF-like domain [Source:NCBI gene (formerly Entrezgene);Acc:825352] identity=79.4; qcov=1; evalue=0; confidence=high
Rice	`Os02g0293400` (SIP14) - identity=88.8; qcov=0.841; evalue=0; confidence=high
GO	GO:0005515 (protein binding); GO:0005737 (cytoplasm); GO:0006511 (ubiquitin-dependent protein catabolic process); GO:0007275 (multicellular organism development); GO:0008270 (zinc ion binding); GO:0061630 (ubiquitin protein ligase activity)
KEGG	smil04120 (Ubiquitin mediated proteolysis - Salvia miltiorrhiza (redroot sage))
Pfam	PF03145 (Sina_TRAF); PF21361 (Sina_ZnF); PF21362 (Sina_RING)
InterPro	-
eggNOG	-
NR	GeneID:131020811

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057805824.1`
2	Nucleus	细胞核	0.60000	`XP_057805824.1`
3	Autophagic vesicle	Autophagic vesicle	0.20000	`XP_057805824.1`
4	Chromosome	染色体	0.00000	`XP_057805824.1`
5	Centromere	着丝粒	0.00000	`XP_057805824.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:55075163`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	C21,C49,C51,C70
`Chr4:55075201`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B131,C14
`Chr4:55075228`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B104,B136,B140
`Chr4:55075270`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A15,B104,B64,B85
`Chr4:55075282`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B105
`Chr4:55075391`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B105
`Chr4:55075405`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B103,B4,B56,B96
`Chr4:55075453`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	C21,C49,C51,C70
`Chr4:55075669`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A8,B115,B21,C8,C9
`Chr4:55075770`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C57
`Chr4:55075794`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B81
`Chr4:55075812`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C50,C74

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805824.1

320 aa

160

320

Sina_RING

Sina_ZnF

Sina_TRAF

PF21362 Sina_RING 60-95 aa PF21361 Sina_ZnF 109-184 aa PF03145 Sina_TRAF 204-301 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805824.1`	Pfam	`PF21362`	Sina_RING	Domain	60	95	6e-13	49.4	E3 ubiquitin-protein ligase sina/sinah, RING finger
`XP_057805824.1`	Pfam	`PF21361`	Sina_ZnF	Domain	109	184	1e-29	103.5	Sina, zinc finger
`XP_057805824.1`	Pfam	`PF03145`	Sina_TRAF	Domain	204	301	1.9e-35	122.0	Sina, TRAF-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057949841.1
AACCTTTACAGATTCTCTCTCATCACCAAGGCATCAAGAACAAGAAAGCACCTTCAAAAAAAAAAAAAAAAAATTGGGAGGGGAGCCATCCTTCCTACTTTTTTTTTTTTCTTCTTCTTCTTCTCTGTTTCACCTTCCGATCTCTGAAACTCTCAAATTTCTGGATATTCATCCAAACTCATCAATAAATCAAGATTTAATTTCCAAATCCCCCCAACCTCCTGAAATGAACCTTAATTGATTTAGAAAAAGAAAAAAAA...

CDS

1 records

下载 CDS FASTA

LOC131020811
ATGGAATCCAGCATTGAATGCTTTTCATTCATTGATGGGATGGATGAAGAAGAGATGTCTCCATCCCATCCTTTCTCTCAGTTTTCATCTTCAAAGCCATCCCACAATAATTCCAACACCAATAATCTCAATGGCTGTGTGATTAATCCTATCACAAGTGTTCATGAGCTTCTTGATTGCCCTGTTTGCACTAATTCTATGTATCCTCCTATCCACCAGTGTCACAATGGGCACACCATTTGCTCTACCTGCAAAGTTAG...

Protein

1 records

下载 Protein FASTA

XP_057805824.1
MESSIECFSFIDGMDEEEMSPSHPFSQFSSSKPSHNNSNTNNLNGCVINPITSVHELLDCPVCTNSMYPPIHQCHNGHTICSTCKVRVHNRCPTCRQELGDIRCLALEKVAESLQLPCKYYSLGCPDIFPYYSKLKHETVCDFRPYGCPYAGSECSVVGDIPFLVDHLRDEHKVDMHSGCTFNHRYVKSNPRDVENATWMLTVFHCFGHYFCLHFEAFQLGTAPVYMAFLRFMGDETEARNYSYSLEVGGNGRKLTWEGT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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