当前解析结果
SmilChr01G001717| 统一新 Gene ID | SmilChr01G001717 |
|---|---|
| 名称 | SmilChr01G001717 |
| 描述 | AP-2 complex subunit alpha-1-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 31645945 - 31656111 / + |
| NCBI Gene ID | LOC131020820 |
|---|---|
| GeneID | 131020820 |
| locus_tag | - |
| NCBI Name | LOC131020820 |
| 原始查询 | LOC131020820 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | AP-2 complex subunit alpha-1-like |
| 产物 | AP-2 complex subunit alpha-1-like |
| Arabidopsis | AT5G22780 (AT5G22780)Adaptor protein complex AP-2, alpha subunit [Source:NCBI gene (formerly Entrezgene);Acc:832341] identity=80.7; qcov=1; evalue=0; confidence=high |
| Rice | Os03g0112101- identity=93.1; qcov=0.382; evalue=0; confidence=low |
| GO | GO:0006886 (intracellular protein transport); GO:0030117 (membrane coat); GO:0030122 (AP-2 adaptor complex); GO:0035615 (clathrin-cargo adaptor activity); GO:0072583 (clathrin-dependent endocytosis) |
| KEGG | smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage)); smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01602 (Adaptin_N); PF02296 (Alpha_adaptin_C); PF02883 (Alpha_adaptinC2); PF12717 (Cnd1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020820 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vesicle | 囊泡 | 1.00000 | XP_057805843.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057805843.1 |
| 3 | Golgi apparatus | 高尔基体 | 0.80000 | XP_057805843.1 |
| 4 | Cytoplasm | 细胞质 | 0.60000 | XP_057805843.1 |
| 5 | Cytoplasmic vesicle | 细胞质囊泡 | 0.60000 | XP_057805843.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:31646180 |
TGA |
T |
2bp_deletion | frameshift_variant | 1 | C65 |
Chr1:31646180 |
TGA |
T |
2bp_deletion | CDS_variant | 1 | C65 |
Chr1:31649138 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C61,C82 |
Chr1:31649266 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B3,B86,C15 |
Chr1:31651222 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B28,B68,C42,D2 |
Chr1:31651241 |
ATG |
A |
2bp_deletion | frameshift_variant | 1 | B124 |
Chr1:31651241 |
ATG |
A |
2bp_deletion | CDS_variant | 1 | B124 |
Chr1:31651433 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B94 |
Chr1:31651476 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C61,C82 |
Chr1:31652334 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C13,C47 |
Chr1:31652953 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr1:31652973 |
G |
GA |
1bp_insertion | frameshift_variant | 4 | A4,B56,B93,B96 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057805843.1PF01602
Adaptin_N 28-582 aa
PF12717
Cnd1 125-265 aa
PF02883
Alpha_adaptinC2 761-858 aa
PF02296
Alpha_adaptin_C 868-984 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057805843.1 |
Pfam | PF01602 |
Adaptin_N | Repeat | 28 | 582 | 3.6e-116 | 389.5 | Adaptin N terminal region |
XP_057805843.1 |
Pfam | PF12717 |
Cnd1 | Repeat | 125 | 265 | 1.9e-10 | 41.7 | non-SMC mitotic condensation complex subunit 1 |
XP_057805843.1 |
Pfam | PF02883 |
Alpha_adaptinC2 | Domain | 761 | 858 | 8.2e-13 | 49.3 | Adaptin C-terminal domain |
XP_057805843.1 |
Pfam | PF02296 |
Alpha_adaptin_C | Domain | 868 | 984 | 7.9e-16 | 59.0 | Alpha adaptin AP2, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。