Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003964`

染色体: Chr04 坐标: 55131980-55139845 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003964`
名称	SmilChr04G003964
描述	serine/arginine-rich splicing factor RS31-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	55131980 - 55139845 / `-`

ID 对照

NCBI Gene ID	`LOC131020825`
GeneID	`131020825`
locus_tag	`-`
NCBI Name	`LOC131020825`
原始查询	`LOC131020825`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	serine/arginine-rich splicing factor RS31-like
产物	serine/arginine-rich splicing factor RS31-like
Arabidopsis	`AT3G61860` (RS31) RNA-binding (RRM/RBD/RNP motifs) family protein [Source:NCBI gene (formerly Entrezgene);Acc:825359] identity=62.7; qcov=1.12; evalue=2.98e-81; confidence=high
Rice	`Os04g0118900` - identity=61.2; qcov=0.99; evalue=1.46e-71; confidence=high
GO	GO:0000398 (mRNA splicing, via spliceosome); GO:0003723 (RNA binding); GO:0016607 (nuclear speck)
KEGG	smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00076 (RRM_1)
InterPro	-
eggNOG	-
NR	GeneID:131020825

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057805845.1`
2	Nuclear speckle	核斑点	1.00000	`XP_057805845.1`
3	Nucleoplasm	核质	0.80000	`XP_057805845.1`
4	Cytoplasm	细胞质	0.20000	`XP_057805845.1`
5	Chromosome	染色体	0.00000	`XP_057805847.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:55132429`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B101,B107,B17,C7
`Chr4:55132431`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B55
`Chr4:55132465`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A6
`Chr4:55132522`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A5,C47
`Chr4:55132738`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr4:55132761`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A1,C50,C77,C81
`Chr4:55132852`	`CA`	`C`	1bp_deletion	frameshift_variant	1	B122
`Chr4:55132852`	`CA`	`C`	1bp_deletion	CDS_variant	1	B122
`Chr4:55132907`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B100

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805845.1

240 aa

120

240

RRM_1

PF00076 RRM_1 4-57 aa PF00076 RRM_1 93-155 aa

XP_057805846.1

240 aa

120

240

RRM_1

PF00076 RRM_1 4-57 aa PF00076 RRM_1 93-155 aa

XP_057805847.1

208 aa

104

208

RRM_1

PF00076 RRM_1 61-123 aa

XP_057805848.1

208 aa

104

208

RRM_1

PF00076 RRM_1 61-123 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805845.1`	Pfam	`PF00076`	RRM_1	Domain	4	57	6.7e-30	103.5	RNA recognition motif
`XP_057805845.1`	Pfam	`PF00076`	RRM_1	Domain	93	155	6.7e-30	103.5	RNA recognition motif
`XP_057805846.1`	Pfam	`PF00076`	RRM_1	Domain	4	57	6.7e-30	103.5	RNA recognition motif
`XP_057805846.1`	Pfam	`PF00076`	RRM_1	Domain	93	155	6.7e-30	103.5	RNA recognition motif
`XP_057805847.1`	Pfam	`PF00076`	RRM_1	Domain	61	123	5e-19	68.7	RNA recognition motif
`XP_057805848.1`	Pfam	`PF00076`	RRM_1	Domain	61	123	5e-19	68.7	RNA recognition motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057949863.1
ATGATTTTGGAGTGAAAAGTTGTTAGAAGGTGAAATTCGCGAGGGATGAGGCCGATCTTTTGCGGCAACTTTGAGTTCGAGACTCGACAATCGGACTTGGAGCGTTTGTTCTCCAAATACGGAAGAATTGAACGTATTGACATGAAATCAGGCTTTGCTTTTATCTACTTTGAGGATGAACGTGATGCAAGAGATGCCATCCGTGGTCTTGATGACGTACCGTTTGGGCATGACAGACGCAGATTATCAGTTGAATGGGC...

XM_057949862.1
CAAGAAAGAGGGAATATACATATATTGAACTCATAGGATAAGACCGACTTTGACCTCATCAGCTCTTTGCCCACTTTCTTCATTTCCTTTTTTCTTCACCCCAATCGAAATTAGGGTTCTTGTTCAATTTTAAAGTTGTTAGAAGGTGAAATTCGCGAGGGATGAGGCCGATCTTTTGCGGCAACTTTGAGTTCGAGACTCGACAATCGGACTTGGAGCGTTTGTTCTCCAAATACGGAAGAATTGAACGTATTGACATG...

CDS

4 records

下载 CDS FASTA

LOC131020825
ATGAGGCCGATCTTTTGCGGCAACTTTGAGTTCGAGACTCGACAATCGGACTTGGAGCGTTTGTTCTCCAAATACGGAAGAATTGAACGTATTGACATGAAATCAGGCTTTGCTTTTATCTACTTTGAGGATGAACGTGATGCAAGAGATGCCATCCGTGGTCTTGATGACGTACCGTTTGGGCATGACAGACGCAGATTATCAGTTGAATGGGCCAGGGGTGAGCGCGGTAGCCATCGTGGTGGTTCGGGATCAAACCC...

Protein

4 records

下载 Protein FASTA

XP_057805845.1
MRPIFCGNFEFETRQSDLERLFSKYGRIERIDMKSGFAFIYFEDERDARDAIRGLDDVPFGHDRRRLSVEWARGERGSHRGGSGSNPRPTKTLFVINFDPIRTRDHDIERHFERYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKIFDRVVSVEYALRDDDERGGRPGSPRGDDGRRGYGASLRSPSPAHRRLRASPDYGLARGADYDRYNGSSYPRARSPERARYRRSPVRRSRP

XP_057805846.1
MRPIFCGNFEFETRQSDLERLFSKYGRIERIDMKSGFAFIYFEDERDARDAIRGLDDVPFGHDRRRLSVEWARGERGSHRGGSGSNPRPTKTLFVINFDPIRTRDHDIERHFERYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKIFDRVVSVEYALRDDDERGGRPGSPRGDDGRRGYGASLRSPSPAHRRLRASPDYGLARGADYDRYNGSSYPRARSPERARYRRSPVRRSRP

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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