Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003991`

染色体: Chr04 坐标: 55312625-55317541 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003991`
名称	SmilChr04G003991
描述	protein NUCLEOLAR COMPLEX ASSOCIATED 4
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	55312625 - 55317541 / `+`

ID 对照

NCBI Gene ID	`LOC131020858`
GeneID	`131020858`
locus_tag	`-`
NCBI Name	`LOC131020858`
原始查询	`LOC131020858`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein NUCLEOLAR COMPLEX ASSOCIATED 4
产物	protein NUCLEOLAR COMPLEX ASSOCIATED 4
Arabidopsis	`AT2G17250` (EMB2762) CCAAT-binding factor [Source:NCBI gene (formerly Entrezgene);Acc:816230] identity=58.3; qcov=1.01; evalue=0; confidence=high
Rice	`Os04g0585300` - identity=54.9; qcov=0.981; evalue=0; confidence=high
GO	GO:0005730 (nucleolus); GO:0030692 (Noc4p-Nop14p complex); GO:0032040 (small-subunit processome); GO:0042254 (ribosome biogenesis)
KEGG	-
Pfam	PF03914 (CBF); PF26702 (TPR_NOC4)
InterPro	-
eggNOG	-
NR	GeneID:131020858

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057805886.1`
2	Nucleolus	核仁	0.80000	`XP_057805886.1`
3	Chromosome	染色体	0.00000	`XP_057805886.1`
4	Centromere	着丝粒	0.00000	`XP_057805886.1`
5	Chromatin	染色质	0.00000	`XP_057805886.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:55312959`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B65,B69,B76,C73,C80
`Chr4:55313069`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C27,C60,D5
`Chr4:55313080`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B2,B35
`Chr4:55313227`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C27,C60,D5
`Chr4:55313241`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A15,B138,B24,B3,C22
`Chr4:55313444`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr4:55313893`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B48,C8
`Chr4:55313914`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B111,B118,B47,B97,C82
`Chr4:55314234`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B108,B118,C22,C56,C57
`Chr4:55314278`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B13,B5,C11,C15,C69
`Chr4:55314976`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B111,B118,B47,B97,C82
`Chr4:55315037`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C50,C74

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805886.1

584 aa

292

584

TPR_NOC4

CBF

PF26702 TPR_NOC4 21-195 aa PF03914 CBF 331-502 aa

XP_057805887.1

579 aa

290

579

TPR_NOC4

CBF

PF26702 TPR_NOC4 21-195 aa PF03914 CBF 326-497 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805886.1`	Pfam	`PF26702`	TPR_NOC4	Repeat	21	195	8.8e-16	59.1	Nucleolar complex protein 4-like, TPR repeats
`XP_057805886.1`	Pfam	`PF03914`	CBF	Repeat	331	502	2.2e-47	161.8	CBF/Mak21 family
`XP_057805887.1`	Pfam	`PF26702`	TPR_NOC4	Repeat	21	195	8.5e-16	59.1	Nucleolar complex protein 4-like, TPR repeats
`XP_057805887.1`	Pfam	`PF03914`	CBF	Repeat	326	497	2.1e-47	161.9	CBF/Mak21 family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057949904.1
AGTCAATACCCAACAACAAAACGGCTAAACCCTTAAACCCTTTAATCTCTCTCTCTCTCTAGCTAGGCGCCTCCCTACCAGCGGCAGCCATGGCGTCCGTCGCATCGGAGAAGAAGAAGCAAAAGAAGCAAAAGAAGCAGAAGAAGAGAGAGAAGCAGAGTCTATCGGAGCTGAAAACTATGGGACAGCAGCTGCTGACCTCTAGAGCTCACGTCAATAACCTCCCCTTTCTCCTAACCTTCATCAACCCCACCTCTACG...

XM_057949903.1
CAAAACGGCTAAACCCTTAAACCCTTTAATCTCTCTCTCTCTCTAGCTAGGCGCCTCCCTACCAGCGGCAGCCATGGCGTCCGTCGCATCGGAGAAGAAGAAGCAAAAGAAGCAAAAGAAGCAGAAGAAGAGAGAGAAGCAGAGTCTATCGGAGCTGAAAACTATGGGACAGCAGCTGCTGACCTCTAGAGCTCACGTCAATAACCTCCCCTTTCTCCTAACCTTCATCAACCCCACCTCTACGCCGCAATACGCACTCG...

CDS

2 records

下载 CDS FASTA

LOC131020858
ATGGCGTCCGTCGCATCGGAGAAGAAGAAGCAAAAGAAGCAAAAGAAGCAGAAGAAGAGAGAGAAGCAGAGTCTATCGGAGCTGAAAACTATGGGACAGCAGCTGCTGACCTCTAGAGCTCACGTCAATAACCTCCCCTTTCTCCTAACCTTCATCAACCCCACCTCTACGCCGCAATACGCACTCGAATCTCTCCTCTCACTCCAATCCTTCTTCACTCCTCTCATCCCCAAACTCCCTTCCTCCTCCTCCAGACATCC...

Protein

2 records

下载 Protein FASTA

XP_057805886.1
MASVASEKKKQKKQKKQKKREKQSLSELKTMGQQLLTSRAHVNNLPFLLTFINPTSTPQYALESLLSLQSFFTPLIPKLPSSSSRHPDSDPDPEFIYLTWLRAKFDELTQSLIDLVVSSQSDGALREVVLDSIMEFVKVGNGGKFHTAIYHKLLRAIVRSELGVDDIVLDMLAEKYFNYVDVRYFTYSSLEKLARTLEREENKEVSQDGNDLLSRPSIELSIQKMYKLLACIQPLEAVEEKLEMWNDSGTLLGKSNDKIG...

XP_057805887.1
MASVASEKKKQKKQKKQKKREKQSLSELKTMGQQLLTSRAHVNNLPFLLTFINPTSTPQYALESLLSLQSFFTPLIPKLPSSSSRHPDSDPDPEFIYLTWLRAKFDELTQSLIDLVVSSQSDGALREVVLDSIMEFVKVGNGGKFHTAIYHKLLRAIVRSELGVDDIVLDMLAEKYFNYVDVRYFTYSSLEKLARTLEREENKEVSQDGNDLLSRPSIELSIQKMYKLLACIQPLEAVEEKLEMWNDSGTLLGKSNDKVL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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