Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G004030`

染色体: Chr04 坐标: 55556816-55562261 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G004030`
名称	SmilChr04G004030
描述	V-type proton ATPase subunit B2-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	55556816 - 55562261 / `-`

ID 对照

NCBI Gene ID	`LOC131020898`
GeneID	`131020898`
locus_tag	`-`
NCBI Name	`LOC131020898`
原始查询	`LOC131020898`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	V-type proton ATPase subunit B2-like
产物	V-type proton ATPase subunit B2-like
Arabidopsis	`AT4G38510` (VAB2) ATPase, V1 complex, subunit B protein [Source:NCBI gene (formerly Entrezgene);Acc:830008] identity=96.7; qcov=0.905; evalue=0; confidence=high
Rice	`Os01g0711000` - identity=96.1; qcov=0.905; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0033180 (proton-transporting V-type ATPase, V1 domain); GO:0046034 (ATP metabolic process); GO:0046961 (proton-transporting ATPase activity, rotational mechanism); GO:1902600 (proton transmembrane transport)
KEGG	smil00190 (Oxidative phosphorylation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage)); smil04145 (Phagocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00006 (ATP-synt_ab); PF02874 (ATP-synt_ab_N); PF22919 (ATP-synt_VA_C)
InterPro	-
eggNOG	-
NR	GeneID:131020898

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Clathrin-coated vesicle	Clathrin-coated vesicle	0.80000	`XP_057805925.1`
2	Endocytic vesicle	Endocytic vesicle	0.60000	`XP_057805926.1`
3	Cytoplasmic vesicle	细胞质囊泡	0.40000	`XP_057805925.1`
4	Vacuole	液泡	0.40000	`XP_057805925.1`
5	Vacuole membrane	液泡膜	0.40000	`XP_057805925.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:55557290`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B60
`Chr4:55557310`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B108,C23
`Chr4:55559043`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B23,B40,D5
`Chr4:55559066`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A20
`Chr4:55559413`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A13,A7,B137,B79,B80
`Chr4:55559422`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B44,B53
`Chr4:55560040`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C26
`Chr4:55560500`	`T`	`TA`	1bp_insertion	frameshift_variant	3	B2,B7,C78
`Chr4:55560500`	`T`	`TA`	1bp_insertion	CDS_variant	3	B2,B7,C78
`Chr4:55560615`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B29,B95
`Chr4:55560638`	`CAG`	`C`	2bp_deletion	frameshift_variant	9	B101,B132,B140,B26,B61,B68,B8,C37,D8
`Chr4:55561008`	`C`	`CAG`	2bp_insertion	frameshift_variant	1	B126

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805925.1

539 aa

270

539

ATP-synt_ab_N

ATP-synt_ab

ATP-synt_VA_C

PF02874 ATP-synt_ab_N 75-141 aa PF00006 ATP-synt_ab 198-428 aa PF22919 ATP-synt_VA_C 434-533 aa

XP_057805926.1

539 aa

270

539

ATP-synt_ab_N

ATP-synt_ab

ATP-synt_VA_C

PF02874 ATP-synt_ab_N 75-141 aa PF00006 ATP-synt_ab 198-428 aa PF22919 ATP-synt_VA_C 434-533 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805925.1`	Pfam	`PF02874`	ATP-synt_ab_N	Domain	75	141	2.1e-15	57.7	ATP synthase alpha/beta family, beta-barrel domain
`XP_057805925.1`	Pfam	`PF00006`	ATP-synt_ab	Domain	198	428	2.4e-75	253.6	ATP synthase alpha/beta family, nucleotide-binding domain
`XP_057805925.1`	Pfam	`PF22919`	ATP-synt_VA_C	Domain	434	533	7e-35	119.8	C-terminal domain of V and A type ATP synthase
`XP_057805926.1`	Pfam	`PF02874`	ATP-synt_ab_N	Domain	75	141	2.1e-15	57.7	ATP synthase alpha/beta family, beta-barrel domain
`XP_057805926.1`	Pfam	`PF00006`	ATP-synt_ab	Domain	198	428	2.4e-75	253.6	ATP synthase alpha/beta family, nucleotide-binding domain
`XP_057805926.1`	Pfam	`PF22919`	ATP-synt_VA_C	Domain	434	533	7e-35	119.8	C-terminal domain of V and A type ATP synthase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057949942.1
AAGAGATACGCTGAGGCTGTCTTTGTCGCCGGGCCGCCATAGAAGCGACACGTGGCACTCTTCTACACCGTCTGATTCGTGCCAATGCGCCCTTACTGCTCATCACACCACCAGCCAATCTGCCCGCTTGTTCCTGTTGTACCTTGGCCGGTAAAAATTCCGCAAAGTTACAGCAGGCTGCAGTAAACCCACGCTTCGACGAGTTGTACACTCCAATTTCATTTTCATTTCTCCAATTATTCCAACTGCTGTAATAAATA...

XM_057949943.1
AAGAGATACGCTGAGGCTGTCTTTGTCGCCGGGCCGCCATAGAAGCGACACGTGGCACTCTTCTACACCGTCTGATTCGTGCCAATGCGCCCTTACTGCTCATCACACCACCAGCCAATCTGCCCGCTTGTTCCTGTTGTACCTTGGCCGGTAAAAATTCCGCAAAGTTACAGCAGGCTGCAGTAAACCCACGCTTCGACGAGTTGTACACTCCAATTTCATTTTCATTTCTCCAATTATTCCAACTGCTGTAATAAATA...

CDS

2 records

下载 CDS FASTA

LOC131020898
ATGATCCATGACTCGAAAATACTGACAATTCATTTTGTTTCAATTTCAATTTCAATTATTCAGATCTCATTATATTGTTTTTGCTGTTTTCATCCATCTCACTGCAATTCTCCTCGCTTTCTCTCTGATTGGGATTCAGCGAAAAGGTTGAATATGGGTGTGACAGAAAACAACATTGACATGGAGGAGGGAACTCTGGAGATCGGAATGGAATATAGAACAGTCTCTGGAGTGGCTGGACCTCTTGTTATCTTAGACAA...

Protein

2 records

下载 Protein FASTA

XP_057805925.1
MIHDSKILTIHFVSISISIIQISLYCFCCFHPSHCNSPRFLSDWDSAKRLNMGVTENNIDMEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEGGEEDNFAIVF...

XP_057805926.1
MIHDSKILTIHFVSISISIIQISLYCFCCFHPSHCNSPRFLSDWDSAKRLNMGVTENNIDMEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGNSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEGGEEDNFAIVF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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