当前解析结果
SmilChr04G004034| 统一新 Gene ID | SmilChr04G004034 |
|---|---|
| 名称 | SmilChr04G004034 |
| 描述 | probable 26S proteasome non-ATPase regulatory subunit 3 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 55586126 - 55590610 / + |
| NCBI Gene ID | LOC131020902 |
|---|---|
| GeneID | 131020902 |
| locus_tag | - |
| NCBI Name | LOC131020902 |
| 原始查询 | LOC131020902 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable 26S proteasome non-ATPase regulatory subunit 3 |
| 产物 | probable 26S proteasome non-ATPase regulatory subunit 3 |
| Arabidopsis | AT1G20200 (EMB2719)PAM domain (PCI/PINT associated module) protein [Source:NCBI gene (formerly Entrezgene);Acc:838609] identity=82.6; qcov=1; evalue=0; confidence=high |
| Rice | Os08g0550100 (OsRpn3)- identity=80.8; qcov=0.949; evalue=0; confidence=high |
| GO | GO:0000502 (proteasome complex); GO:0006511 (ubiquitin-dependent protein catabolic process); GO:0008541 (proteasome regulatory particle, lid subcomplex); GO:0030234 (enzyme regulator activity); GO:0042176 (regulation of protein catabolic process) |
| KEGG | smil03050 (Proteasome - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01399 (PCI); PF08375 (Rpn3_C); PF25573 (TPR_PSMD3_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020902 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057805930.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057805930.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057805930.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057805930.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057805930.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:55586744 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C38 |
Chr4:55587160 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A20,B34,B42,C25 |
Chr4:55587171 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A20,B34,C25 |
Chr4:55588046 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B4 |
Chr4:55588047 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C12 |
Chr4:55588115 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B35,C24 |
Chr4:55588119 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B40,D11 |
Chr4:55588447 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr4:55589424 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B117,B97,C55 |
Chr4:55589888 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr4:55589900 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B35,B4,C24 |
Chr4:55589963 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057805930.1PF25573
TPR_PSMD3_N 22-317 aa
PF01399
PCI 335-417 aa
PF08375
Rpn3_C 421-486 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057805930.1 |
Pfam | PF25573 |
TPR_PSMD3_N | Repeat | 22 | 317 | 3e-112 | 375.8 | PSMD3-like, N-terminal TPR repeats |
XP_057805930.1 |
Pfam | PF01399 |
PCI | Domain | 335 | 417 | 6.9e-20 | 71.8 | PCI domain |
XP_057805930.1 |
Pfam | PF08375 |
Rpn3_C | Family | 421 | 486 | 7e-26 | 91.2 | Proteasome regulatory subunit C-terminal |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。