Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G004042`

染色体: Chr04 坐标: 55647357-55654427 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G004042`
名称	SmilChr04G004042
描述	chloride channel protein CLC-d
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	55647357 - 55654427 / `-`

ID 对照

NCBI Gene ID	`LOC131020911`
GeneID	`131020911`
locus_tag	`-`
NCBI Name	`LOC131020911`
原始查询	`LOC131020911`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	chloride channel protein CLC-d
产物	chloride channel protein CLC-d
Arabidopsis	`AT5G26240` (CLC-D) chloride channel D [Source:NCBI gene (formerly Entrezgene);Acc:832693] identity=79; qcov=1; evalue=0; confidence=high
Rice	`Os01g0876100` (OsCBSCLC1) - identity=48; qcov=0.927; evalue=0; confidence=high
GO	GO:0005247 (voltage-gated chloride channel activity); GO:0006821 (chloride transport); GO:0016020 (membrane); GO:0043231 (intracellular membrane-bounded organelle); GO:0055085 (transmembrane transport)
KEGG	smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00571 (CBS); PF00654 (Voltage_CLC)
InterPro	-
eggNOG	-
NR	GeneID:131020911

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasmic vesicle	细胞质囊泡	0.80000	`XP_057805941.1`
2	Vesicle	囊泡	0.80000	`XP_057805941.1`
3	Cell membrane	细胞膜	0.80000	`XP_057805942.1`
4	Secretory vesicle	Secretory vesicle	0.40000	`XP_057805939.1`
5	Synaptic vesicle	Synaptic vesicle	0.40000	`XP_057805940.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:55647835`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C62
`Chr4:55648534`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B79
`Chr4:55648757`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C10
`Chr4:55648903`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B131,B41
`Chr4:55649711`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:55650318`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:55651157`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:55651186`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:55651521`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr4:55652459`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C67
`Chr4:55652734`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B44,C56,C65,C79
`Chr4:55652755`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805939.1

797 aa

398

797

Voltage_CLC

CBS

PF00654 Voltage_CLC 134-555 aa PF00571 CBS 709-756 aa

XP_057805940.1

796 aa

398

796

Voltage_CLC

CBS

PF00654 Voltage_CLC 134-555 aa PF00571 CBS 708-755 aa

XP_057805941.1

773 aa

386

773

Voltage_CLC

CBS

PF00654 Voltage_CLC 134-555 aa PF00571 CBS 709-756 aa

XP_057805942.1

772 aa

386

772

Voltage_CLC

CBS

PF00654 Voltage_CLC 134-555 aa PF00571 CBS 708-755 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805939.1`	Pfam	`PF00654`	Voltage_CLC	Family	134	555	1e-84	285.5	Voltage gated chloride channel
`XP_057805939.1`	Pfam	`PF00571`	CBS	Domain	709	756	1.9e-12	48.0	CBS domain
`XP_057805940.1`	Pfam	`PF00654`	Voltage_CLC	Family	134	555	9.9e-85	285.5	Voltage gated chloride channel
`XP_057805940.1`	Pfam	`PF00571`	CBS	Domain	708	755	1.9e-12	48.0	CBS domain
`XP_057805941.1`	Pfam	`PF00654`	Voltage_CLC	Family	134	555	9.2e-85	285.6	Voltage gated chloride channel
`XP_057805941.1`	Pfam	`PF00571`	CBS	Domain	709	756	1.8e-12	48.1	CBS domain
`XP_057805942.1`	Pfam	`PF00654`	Voltage_CLC	Family	134	555	9.2e-85	285.6	Voltage gated chloride channel
`XP_057805942.1`	Pfam	`PF00571`	CBS	Domain	708	755	1.8e-12	48.1	CBS domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057949959.1
TCGTTACATGATTTGATTTTTTGCACGTTTTCGAAAATAGAAAAGATATTAACCGTCTTTTCGTATTGTTTCAGTGTAGTTGTCTCTCTCGATTTCTCATGACCGCCGAGAAAATTATTTGTTTCAATTTTTCGTTGTAAAGAAAAATCGGCACTCATTTTGTTCCACAATAATTCGCTTCTGCTAATTCGTAGGAGCTGCAGCATCGCTAAATCTGTATAATTTGATTGGTCTTTTTTTTGTTTGTTTTTTTTTTCTGA...

XM_057949957.1
TTGATTTTTTGCACGTTTTCGAAAATAGAAAAGATATTAACCGTCTTTTCGTATTGTTTCAGTGTAGTTGTCTCTCTCGATTTCTCATGACCGCCGAGAAAATTATTTGTTTCAATTTTTCGTTGTAAAGAAAAATCGGCACTCATTTTGTTCCACAATAATTCGCTTCTGCTAATTCGTAGGAGCTGCAGCATCGCTAAATCTGTATAATTTGATTGGTCTTTTTTTTGTTTGTTTTTTTTTTCTGAATCGTATAATTC...

CDS

4 records

下载 CDS FASTA

LOC131020911
ATGCTGTCGAATCATTTGCAGAATGGGGTGGAGACGGCGAAGCTGATCTGGTCACGGCTGCCGAACTCGGAGGTGGAAGAAGAGGGGGCAGCTGCCGGAGATTTCAGCCGGATTAAGAAGGACGATGGTAGCTCTGTCGAGAGCCTTGACTATGAAGTAATTGAAAATTACGCTTACAGACAAGAACAGGCAAAAAGGGGGAAGGTTTATATGGCATATAGCGTGGTGGTAAAATGGCTAATGGCATTGCTTATTGGGAT...

Protein

4 records

下载 Protein FASTA

XP_057805939.1
MLSNHLQNGVETAKLIWSRLPNSEVEEEGAAAGDFSRIKKDDGSSVESLDYEVIENYAYRQEQAKRGKVYMAYSVVVKWLMALLIGIGTALAAVFINLSVENFAGWKYSWTFNLIQKSYFAGFLVYTLINLALVLSSVYIVTQFSPEAAGSGIPEIKGYLNGIDTHGILLFRTLVGKIFGSIGSVGGGLALGKEGPLVHIGACIASMLGQGGSTKYHLRTRWLQIFTSERDRRDLVTCGCAAGVAAAFRAPVGGVLFALE...

XP_057805940.1
MLSNHLQNGVETAKLIWSRLPNSEVEEEGAAAGDFSRIKKDDGSSVESLDYEVIENYAYRQEQAKRGKVYMAYSVVVKWLMALLIGIGTALAAVFINLSVENFAGWKYSWTFNLIQKSYFAGFLVYTLINLALVLSSVYIVTQFSPEAAGSGIPEIKGYLNGIDTHGILLFRTLVGKIFGSIGSVGGGLALGKEGPLVHIGACIASMLGQGGSTKYHLRTRWLQIFTSERDRRDLVTCGCAAGVAAAFRAPVGGVLFALE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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