Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G004059`

染色体: Chr04 坐标: 55737166-55740744 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G004059`
名称	SmilChr04G004059
描述	uncharacterized SmilChr04G004059
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	55737166 - 55740744 / `-`

ID 对照

NCBI Gene ID	`LOC131020928`
GeneID	`131020928`
locus_tag	`-`
NCBI Name	`LOC131020928`
原始查询	`LOC131020928`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	SNARE associated Golgi protein family [Source:NCBI gene (formerly Entrezgene);Acc:832026]; symbol=AT5G19070; hit=AT5G19070; species=arabidopsis; confidence=high
产物	SNARE associated Golgi protein family [Source:NCBI gene (formerly Entrezgene);Acc:832026]; symbol=AT5G19070; hit=AT5G19070; species=arabidopsis; confidence=high
Arabidopsis	`AT5G19070` (AT5G19070) SNARE associated Golgi protein family [Source:NCBI gene (formerly Entrezgene);Acc:832026] identity=68.7; qcov=1.02; evalue=9.96e-124; confidence=high
Rice	`Os07g0655900` (P0018C07.124) - identity=67.3; qcov=0.986; evalue=4.08e-115; confidence=high
GO	GO:0016020 (membrane)
KEGG	-
Pfam	PF09335 (VTT_dom)
InterPro	-
eggNOG	-
NR	GeneID:131020928

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole membrane	液泡膜	0.80000	`XP_057805962.1`
2	Vacuole	液泡	0.60000	`XP_057805962.1`
3	Cell membrane	细胞膜	0.20000	`XP_057805962.1`
4	Golgi apparatus	高尔基体	0.20000	`XP_057805962.1`
5	Nucleus	细胞核	0.00000	`XP_057805962.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:55737636`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B92
`Chr4:55737636`	`TG`	`T`	1bp_deletion	CDS_variant	1	B92
`Chr4:55737640`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C79
`Chr4:55737643`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B26,B47,B63
`Chr4:55737644`	`GC`	`G`	1bp_deletion	frameshift_variant	104	A10,A11,A13,A15,A16,A18,A2,A24,A3,A4,A5,B100,B106,B111,B112,B115,B12,B120,B122,B123,B124,B125,B126,B129,B130,B132,B133,B136,B137,B138,B14,B140,B16,B18,B19,B23,B24,B26,B29,B30,B37,B38,B39,B40,B44,B49,B5,B50,B56,B59,B6,B61,B64,B70,B71,B73,B77,B8,B80,B82,B83,B84,B9,B93,B95,B96,B98,B99,C10,C12,C13,C14,C16,C18,C21,C27,C28,C34,C35,C37,C39,C42,C45,C51,C52,C57,C61,C63,C65,C67,C7,C71,C73,C75,C77,C78,C8,C80,C84,C9,D1,D6,D8,D9
`Chr4:55737646`	`C`	`CT`	1bp_insertion	frameshift_variant	3	B130,C37,D6
`Chr4:55737646`	`C`	`CT`	1bp_insertion	CDS_variant	3	B130,C37,D6
`Chr4:55737656`	`TA`	`T`	1bp_deletion	frameshift_variant	100	A10,A11,A13,A15,A16,A18,A2,A24,A3,A4,A5,B100,B106,B111,B112,B115,B12,B120,B122,B123,B124,B125,B126,B129,B132,B133,B136,B137,B138,B14,B140,B16,B18,B19,B23,B24,B26,B29,B30,B37,B38,B39,B40,B44,B49,B5,B50,B56,B59,B6,B61,B64,B70,B71,B73,B77,B8,B80,B82,B83,B9,B93,B95,B96,B98,B99,C10,C12,C13,C14,C16,C18,C21,C27,C28,C34,C35,C39,C42,C45,C51,C52,C57,C61,C63,C65,C67,C7,C71,C73,C75,C77,C78,C8,C80,C84,C9,D1,D8,D9
`Chr4:55737658`	`A`	`AG`	1bp_insertion	frameshift_variant	100	A10,A11,A13,A15,A16,A18,A2,A24,A3,A4,A5,B100,B106,B111,B112,B115,B12,B120,B122,B123,B124,B125,B126,B129,B132,B133,B136,B137,B138,B14,B140,B16,B18,B19,B23,B24,B26,B29,B30,B37,B38,B39,B44,B49,B5,B50,B56,B59,B6,B61,B64,B70,B71,B73,B77,B8,B80,B82,B83,B84,B9,B93,B95,B96,B98,B99,C10,C12,C13,C14,C16,C18,C21,C27,C28,C34,C35,C39,C42,C45,C51,C52,C57,C61,C63,C65,C67,C7,C71,C73,C75,C77,C78,C8,C80,C84,C9,D1,D8,D9
`Chr4:55737667`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr4:55737675`	`G`	`GT`	1bp_insertion	frameshift_variant	85	A10,A11,A13,A15,A16,A18,A2,A24,A3,A5,B100,B111,B112,B115,B12,B120,B122,B123,B124,B125,B126,B129,B132,B133,B136,B138,B14,B140,B16,B18,B23,B24,B26,B29,B30,B37,B38,B39,B44,B49,B50,B59,B6,B61,B64,B70,B71,B77,B8,B80,B82,B84,B9,B93,B95,B98,B99,C10,C12,C13,C14,C18,C27,C28,C34,C35,C39,C42,C45,C51,C57,C61,C63,C65,C67,C7,C71,C73,C75,C77,C78,C8,C84,C9,D1
`Chr4:55737677`	`TC`	`T`	1bp_deletion	frameshift_variant	86	A10,A11,A13,A15,A16,A18,A2,A24,A3,A5,B100,B111,B112,B115,B12,B120,B122,B123,B124,B125,B126,B129,B132,B133,B136,B138,B14,B140,B16,B18,B23,B24,B26,B29,B30,B37,B38,B39,B40,B44,B49,B50,B59,B6,B61,B64,B70,B71,B77,B8,B80,B82,B84,B9,B93,B95,B98,B99,C10,C12,C13,C14,C18,C27,C28,C34,C35,C39,C42,C45,C51,C57,C61,C63,C65,C67,C7,C71,C73,C75,C77,C78,C8,C84,C9,D1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805962.1

276 aa

138

276

VTT_dom

PF09335 VTT_dom 67-185 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805962.1`	Pfam	`PF09335`	VTT_dom	Domain	67	185	1.8e-25	90.5	VTT domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057949979.1
AAAGCTTTTACAACGCCAGCAGCAAAATTACACGAAAAAGAAAGAAAAAAAAATTGAAAACAGAAAATTAAAGCAAGAAAAATTTCAAGAAATTCATTTTACGAATGCCAGAAATATGAAAAAGAGAGAACAGAACGCGGACTTACCCAATCATAGCTGAGATTCTCAATCTTTAGAGTAATTTTTTGGCCCTTTTGGGGGTGGCGAAAGATTTTATTTTTTTGTGGGTTTTTTTACGTTGTTCGTGTTGGGGGAAATTT...

CDS

1 records

下载 CDS FASTA

LOC131020928
ATGGCGTTCAATATCACGTGGGCTTCGTTCATCAGATTTTTCTTGCTTTTGCTGCTGCTCGCTGCTATTGTGATTGCTTGCTTCACTCTCCCCGTTGAAAAGATGCTTAGTGATTTCTTGGTATGGGTAGAGGAAGATCTTGGTCCTTGGGGTCCTCTGGTGCTAGCTGTGGCTTACATTCCTTTAACAATATTGGCGGTACCAGCTTCCGTACTTACACTCGGTGGTGGCTATCTTTTTGGCTTGCCAGTCGGATTTGT...

Protein

1 records

下载 Protein FASTA

XP_057805962.1
MAFNITWASFIRFFLLLLLLAAIVIACFTLPVEKMLSDFLVWVEEDLGPWGPLVLAVAYIPLTILAVPASVLTLGGGYLFGLPVGFVADSVGATIGAGAAFLLGRTLGRSFVMAKLKDYPQFRAVEIAIRRSGFKIVLLLRLVPLLPFNMLNYLLSVTSVPLVPYLLASWLGMMPITLALVYVGTTLKDISDVTHGWSGFSKTRWAFIVLSLVVSVVLMVIVTRVAKAALEKALAENEDSDREPRLAGTYRWQAGSTENL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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