当前解析结果
SmilChr04G004067| 统一新 Gene ID | SmilChr04G004067 |
|---|---|
| 名称 | SmilChr04G004067 |
| 描述 | chaperone protein ClpC4, chloroplastic-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 55784229 - 55787096 / - |
| NCBI Gene ID | LOC131020938 |
|---|---|
| GeneID | 131020938 |
| locus_tag | - |
| NCBI Name | LOC131020938 |
| 原始查询 | LOC131020938 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | chaperone protein ClpC4, chloroplastic-like |
| 产物 | chaperone protein ClpC4%2C chloroplastic-like |
| Arabidopsis | AT5G50920 (CLPC1)CLPC homologue 1 [Source:NCBI gene (formerly Entrezgene);Acc:835165] identity=45.4; qcov=1.03; evalue=0; confidence=high |
| Rice | Os11g0267400 (CLPC3)- identity=42.9; qcov=1.04; evalue=0; confidence=medium |
| GO | GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0016887 (ATP hydrolysis activity); GO:0034605 (cellular response to heat) |
| KEGG | - |
| Pfam | PF00004 (AAA); PF07724 (AAA_2); PF07728 (AAA_5); PF10431 (ClpB_D2-small); PF17871 (AAA_lid_9); PF23569 (NBD_SMAX1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020938 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057805972.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057805972.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057805972.1 |
| 4 | Nucleoplasm | 核质 | 0.40000 | XP_057805972.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057805972.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:55784385 |
CA |
C |
1bp_deletion | frameshift_variant | 11 | B10,B106,B119,B12,B129,B50,B86,C25,C31,C48,C55 |
Chr4:55784427 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A9,B105,B54 |
Chr4:55784437 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A9,B105,B54 |
Chr4:55784499 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B103 |
Chr4:55784557 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr4:55784564 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A9,B105,B54 |
Chr4:55784584 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B57,B74,B89,C36,C70 |
Chr4:55784608 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B13,B133,B64,B8,D11 |
Chr4:55784626 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr4:55784690 |
G |
GC |
1bp_insertion | frameshift_variant | 6 | B128,B137,B48,B65,B89,B98 |
Chr4:55784692 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr4:55784712 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B103 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057805972.1PF23569
NBD_SMAX1 38-137 aa
PF00004
AAA 55-183 aa
PF17871
AAA_lid_9 191-253 aa
PF07724
AAA_2 327-471 aa
PF07728
AAA_5 333-468 aa
PF00004
AAA 333-474 aa
PF10431
ClpB_D2-small 477-558 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057805972.1 |
Pfam | PF23569 |
NBD_SMAX1 | Domain | 38 | 137 | 1.2e-07 | 32.5 | SMAX1 nucleotide binding domain |
XP_057805972.1 |
Pfam | PF00004 |
AAA | Domain | 55 | 183 | 1.3e-23 | 84.6 | ATPase family associated with various cellular activities (AAA) |
XP_057805972.1 |
Pfam | PF17871 |
AAA_lid_9 | Domain | 191 | 253 | 5.2e-23 | 81.6 | AAA lid domain |
XP_057805972.1 |
Pfam | PF07724 |
AAA_2 | Domain | 327 | 471 | 1.3e-58 | 198.5 | AAA domain (Cdc48 subfamily) |
XP_057805972.1 |
Pfam | PF07728 |
AAA_5 | Domain | 333 | 468 | 2.8e-16 | 60.5 | AAA domain (dynein-related subfamily) |
XP_057805972.1 |
Pfam | PF00004 |
AAA | Domain | 333 | 474 | 1.3e-23 | 84.6 | ATPase family associated with various cellular activities (AAA) |
XP_057805972.1 |
Pfam | PF10431 |
ClpB_D2-small | Domain | 477 | 558 | 2.1e-20 | 73.3 | C-terminal, D2-small domain, of ClpB protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。