Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G004081`

染色体: Chr04 坐标: 55858332-55865684 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G004081`
名称	SmilChr04G004081
描述	superoxide dismutase [Cu-Zn]-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	55858332 - 55865684 / `-`

ID 对照

NCBI Gene ID	`LOC131020953`
GeneID	`131020953`
locus_tag	`-`
NCBI Name	`LOC131020953`
原始查询	`LOC131020953`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	superoxide dismutase [Cu-Zn]-like
产物	superoxide dismutase [Cu-Zn]-like
Arabidopsis	`AT1G08830` (CSD1) copper/zinc superoxide dismutase 1 [Source:NCBI gene (formerly Entrezgene);Acc:837405] identity=83.7; qcov=1; evalue=8.1e-87; confidence=high
Rice	`Os07g0665200` (Cu/Zn-SOD) - identity=82.3; qcov=1; evalue=1.93e-88; confidence=high
GO	GO:0004784 (superoxide dismutase activity); GO:0005507 (copper ion binding); GO:0019430 (removal of superoxide radicals)
KEGG	smil04146 (Peroxisome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00080 (Sod_Cu)
InterPro	-
eggNOG	-
NR	GeneID:131020953

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057805987.1`
2	Cytosol	细胞质基质	1.00000	`XP_057805987.1`
3	Mitochondrion	线粒体	0.60000	`XP_057805988.1`
4	Mitochondrion intermembrane space	Mitochondrion intermembrane space	0.40000	`XP_057805988.1`
5	Secreted	分泌到胞外	0.20000	`XP_057805987.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:55858846`	`G`	`A`	EMS_canonical_SNV	stop_gained	15	A2,B106,B11,B130,B133,B139,B140,B19,B5,B8,C20,C32,C65,C68,D9
`Chr4:55858918`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C16,D5
`Chr4:55859538`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:55860003`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A20,A3,B103,B16,B91
`Chr4:55860011`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A20,A3,B103,B16,B91
`Chr4:55860017`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A20,B103,B16,B91

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805987.1

165 aa

165

Sod_Cu

PF00080 Sod_Cu 14-147 aa

XP_057805988.1

153 aa

153

Sod_Cu

PF00080 Sod_Cu 14-149 aa

XP_057805989.1

153 aa

153

Sod_Cu

PF00080 Sod_Cu 14-149 aa

XP_057805990.1

153 aa

153

Sod_Cu

PF00080 Sod_Cu 14-149 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805987.1`	Pfam	`PF00080`	Sod_Cu	Domain	14	147	2.7e-49	167.7	Copper/zinc superoxide dismutase (SODC)
`XP_057805988.1`	Pfam	`PF00080`	Sod_Cu	Domain	14	149	1.3e-50	171.9	Copper/zinc superoxide dismutase (SODC)
`XP_057805989.1`	Pfam	`PF00080`	Sod_Cu	Domain	14	149	1.3e-50	171.9	Copper/zinc superoxide dismutase (SODC)
`XP_057805990.1`	Pfam	`PF00080`	Sod_Cu	Domain	14	149	1.3e-50	171.9	Copper/zinc superoxide dismutase (SODC)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057950005.1
AGCACCTCGTATATTCAATCATTGAGGGTTGGCCATCATGAAATTTATTTTTTCTTCCGAATACAATAACATTTGAATTATTACTAATATATGAGAATTTATGTGTATATATATAATTCACATATTACATCTGAAAAACATCAACTTGTTAAATGACCTACACGTTTCAATGTTTTCTTTTTTCTTTTTTTTCCGAAAATAATCTGAAAAAACAATAAACCTTATAAGTTACTAACCCAAAGCATTTTTCACAACTAGAA...

XM_057950006.1
AGCACCTCGTATATTCAATCATTGAGGGTTGGCCATCATGAAATTTATTTTTTCTTCCGAATACAATAACATTTGAATTATTACTAATATATGAGAATTTATGTGTATATATATAATTCACATATTACATCTGAAAAACATCAACTTGTTAAATGACCTACACGTTTCAATGTTTTCTTTTTTCTTTTTTTTCCGAAAATAATCTGAAAAAACAATAAACCTTATAAGTTACTAACCCAAAGCATTTTTCACAACTAGAA...

CDS

4 records

下载 CDS FASTA

LOC131020953
ATGGCGAAGGCTGTTGCAGTGCTCAGCAGCAGTGAGGGTGTCAAGGGCACTATCTACTTCACACAGGAAGGAGATGGCCCCACGAACGTAACGGGAAATATCTCCGGCCTTAAGCCGCCCGGGCTCCACGGCCTTCATGTGCATGCCCTCGGTGACACCACCAATGGCTGCATGTCAACTGGGCCCCATTTCAATCCGACTGACAAAGATCACGGTGCTCCTGATGATGAGATTCGACACGCTGGTGATCTTGGCAACGT...

Protein

4 records

下载 Protein FASTA

XP_057805987.1
MAKAVAVLSSSEGVKGTIYFTQEGDGPTNVTGNISGLKPPGLHGLHVHALGDTTNGCMSTGPHFNPTDKDHGAPDDEIRHAGDLGNVTAGDDGTATFTIVDKQIPLSGPHSIVGRAVVVHADPDDLGRGGHELSKATGNAGGRVACGKENIILISYNAIQTCCRV

XP_057805988.1
MAKAVAVLSSSEGVKGTIYFTQEGDGPTNVTGNISGLKPPGLHGLHVHALGDTTNGCMSTGPHFNPTDKDHGAPDDEIRHAGDLGNVTAGDDGTATFTIVDKQIPLSGPHSIVGRAVVVHADPDDLGRGGHELSKATGNAGGRVACGIIGLQG

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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