Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G004082`

染色体: Chr04 坐标: 55866031-55873695 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G004082`
名称	SmilChr04G004082
描述	serine/threonine-protein kinase RUNKEL
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	55866031 - 55873695 / `+`

ID 对照

NCBI Gene ID	`LOC131020955`
GeneID	`131020955`
locus_tag	`-`
NCBI Name	`LOC131020955`
原始查询	`LOC131020955`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	serine/threonine-protein kinase RUNKEL
产物	serine/threonine-protein kinase RUNKEL
Arabidopsis	`AT5G18700` (AT5G18700) kinase family with ARM repeat domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:831988] identity=61.9; qcov=1.01; evalue=0; confidence=high
Rice	`Os01g0259400` - identity=56.9; qcov=1.01; evalue=0; confidence=high
GO	GO:0000911 (cytokinesis by cell plate formation); GO:0000914 (phragmoplast assembly); GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0008017 (microtubule binding)
KEGG	-
Pfam	PF00069 (Pkinase); PF03109 (ABC1); PF07714 (PK_Tyr_Ser-Thr); PF23606 (HEAT_ULK4); PF24970 (ARM_RUK)
InterPro	-
eggNOG	-
NR	GeneID:131020955

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057805991.1`
2	Cytoskeleton	细胞骨架	0.20000	`XP_057805991.1`
3	Spindle	Spindle	0.20000	`XP_057805991.1`
4	Cytosol	细胞质基质	0.20000	`XP_057805991.1`
5	Nucleus	细胞核	0.00000	`XP_057805991.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:55868447`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B5,B55,C40
`Chr4:55868724`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B67
`Chr4:55868958`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr4:55869225`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B50
`Chr4:55869309`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B5,B55,C40
`Chr4:55869464`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr4:55869957`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C13
`Chr4:55870119`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr4:55870185`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B117,B137,C52,C81
`Chr4:55870342`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B68
`Chr4:55870632`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr4:55870636`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B72

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805991.1

1363 aa

682

1363

Pkinase

PK_Tyr_Ser-Thr

ABC1

HEAT_ULK4

ARM_RUK

PF00069 Pkinase 4-254 aa PF07714 PK_Tyr_Ser-Thr 6-250 aa PF03109 ABC1 66-148 aa PF23606 HEAT_ULK4 925-1118 aa PF24970 ARM_RUK 1125-1363 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805991.1`	Pfam	`PF00069`	Pkinase	Domain	4	254	2.8e-67	227.6	Protein kinase domain
`XP_057805991.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	6	250	9.5e-41	140.5	Protein tyrosine and serine/threonine kinase
`XP_057805991.1`	Pfam	`PF03109`	ABC1	Domain	66	148	1.5e-06	28.3	ABC1 atypical kinase-like domain
`XP_057805991.1`	Pfam	`PF23606`	HEAT_ULK4	Repeat	925	1118	1e-72	244.6	Serine/threonine-protein kinase ULK4-like, HEAT repeats
`XP_057805991.1`	Pfam	`PF24970`	ARM_RUK	Repeat	1125	1363	1.9e-104	349.1	RUNKEL ARM-repeat domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009100810.1
TCTTCACCCGCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACACACACACCTCACACAGAAGGCGTTGATTGACGCACAGATTTGAAGAAGCCCAAGCATGAATCACTACCACATTTACGAAGCCATCGGCCGCGGCAAATATTCGACTGTCTACAAGGGAAGAAAGAAGAAGACTATTGAGTATTTCGCCATTAAGAGCGTCGACAAATCTCATCGGAGCAAGGTTCT...

XR_009100811.1
TCTTCACCCGCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACACACACACCTCACACAGAAGGCGTTGATTGACGCACAGATTTGAAGAAGCCCAAGCATGAATCACTACCACATTTACGAAGCCATCGGCCGCGGCAAATATTCGACTGTCTACAAGGGAAGAAAGAAGAAGACTATTGAGTATTTCGCCATTAAGAGCGTCGACAAATCTCATCGGAGCAAGGTTCT...

CDS

1 records

下载 CDS FASTA

LOC131020955
ATGAATCACTACCACATTTACGAAGCCATCGGCCGCGGCAAATATTCGACTGTCTACAAGGGAAGAAAGAAGAAGACTATTGAGTATTTCGCCATTAAGAGCGTCGACAAATCTCATCGGAGCAAGGTTCTTCAGGAAGTGAGGATTCTTCACACTCTAGATCATTCTAACGTGCTAAAGTTCTACTCATGGTACGAAACATCAGCTCATTTGTGGTTAGTTCTCGAGTATTGCGTTGGAGGAGATCTGATGACTTTATT...

Protein

1 records

下载 Protein FASTA

XP_057805991.1
MNHYHIYEAIGRGKYSTVYKGRKKKTIEYFAIKSVDKSHRSKVLQEVRILHTLDHSNVLKFYSWYETSAHLWLVLEYCVGGDLMTLLQQDGKLPEESIHDLAYGLVAALQYLHSKGIIYCDLKPSNILLDENGQTKLCDFGLARKLSDISMTSQLPQAKRGTPCYMSPELFQDGGVHSYASDFWALGCVLYECYTGRPPFIDKEFTQLAKSILLEAHPPLPGNPTRPFVNLINSLLIKDPAERIQWPELCNHAFWRTKFV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器