Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G004086`

染色体: Chr04 坐标: 55892825-55896054 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G004086`
名称	SmilChr04G004086
描述	probable serine/threonine-protein kinase At1g54610
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	55892825 - 55896054 / `-`

ID 对照

NCBI Gene ID	`LOC131020959`
GeneID	`131020959`
locus_tag	`-`
NCBI Name	`LOC131020959`
原始查询	`LOC131020959`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable serine/threonine-protein kinase At1g54610
产物	probable serine/threonine-protein kinase At1g54610
Arabidopsis	`AT1G54610` (AT1G54610) Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841903] identity=73.3; qcov=0.874; evalue=0; confidence=high
Rice	`Os01g0367700` (Orysa) - identity=75; qcov=0.816; evalue=0; confidence=high
GO	GO:0000307 (cyclin-dependent protein kinase holoenzyme complex); GO:0004693 (cyclin-dependent protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0006468 (protein phosphorylation); GO:0008353 (RNA polymerase II CTD heptapeptide repeat kinase activity); GO:0032968 (positive regulation of transcription elongation by RNA polymerase II)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:131020959

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057805998.1`
2	Cell membrane	细胞膜	0.60000	`XP_057805998.1`
3	Nucleus	细胞核	0.20000	`XP_057805998.1`
4	Cytoplasm	细胞质	0.20000	`XP_057805998.1`
5	Chromosome	染色体	0.00000	`XP_057805998.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:55892994`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C77,C81
`Chr4:55893006`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	C53,C8,C86,D10,D11
`Chr4:55893013`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C81
`Chr4:55893049`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B17,C8,D10
`Chr4:55893078`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B133,B8,C53
`Chr4:55893198`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B136,B2,D6
`Chr4:55893228`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C32,C68
`Chr4:55893285`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B133,B8,C53
`Chr4:55893289`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B129,B136,B2,D6
`Chr4:55893441`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B129,B136,B2,D6
`Chr4:55893470`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B75,C36
`Chr4:55893816`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C81

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805998.1

588 aa

294

588

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 129-413 aa PF07714 PK_Tyr_Ser-Thr 131-340 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805998.1`	Pfam	`PF00069`	Pkinase	Domain	129	413	2.8e-67	227.6	Protein kinase domain
`XP_057805998.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	131	340	1e-30	107.6	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057950015.1
CGAAGCACACGCTTTCTCTCTCTCTAAAAGCATTATATTTTATTCGAGAAATAAAAAATATGCGCAAATCGAACACTCACAAGCGCAGATCTGGTGTTTGATCATTTGCCCCACTCACACCAAACACAAAAAACCCATTCTTTTTCCTCTTCCATTTTCTGACCAAAGTGGAAAGTGGGAATTCAACTGTTCAGCTTTAGCTCACTTCTTGATCTTTTTTGTTTAATCCACAAGAAAAGGGCAGCTGAAAAAAAAAAAGG...

CDS

1 records

下载 CDS FASTA

LOC131020959
ATGGGGTGTGTTTTTGGGAAACAGATCCAGTCGAGTAGGGATCTTGTAGTTGAGAAGGAGAGAGAGAAAGATTTGGCCTTGTCATCAGGGAGGCGAGAGAAAGTAGTGGTTGGTTCAGTTAGTAAATCCGAGGAGGGAGGTGGTGGTGGAGGAGGAGGAGGGGGTGGTGAGGTTCAGAATGGGGGCCAGAAGGAGGAGGAGGAGCGGAAGGAGGAGAATGCACGACGGCCAAGGGGCGGGAGGAGGAGGTCGAGGCCAAA...

Protein

1 records

下载 Protein FASTA

XP_057805998.1
MGCVFGKQIQSSRDLVVEKEREKDLALSSGRREKVVVGSVSKSEEGGGGGGGGGGGEVQNGGQKEEEERKEENARRPRGGRRRSRPNPRLSNPPKHIHGEQVAAGWPSWLSAVAGEAINGWTPRRADSFEKIDKIGQGTYSNVYKARDTITGKIVALKKVRFDNLEPESVRFMAREILILRRLDHPNVVKLQGLVTSRMSCSLYLVFDYMEHDLAGLASSPGVKFTEPQVKCYMRQLLSGLEHCHSRHVLHRDIKGSNLL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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