当前解析结果
SmilChr04G004088| 统一新 Gene ID | SmilChr04G004088 |
|---|---|
| 名称 | SmilChr04G004088 |
| 描述 | UDP-glucosyltransferase 29-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 55904293 - 55905948 / + |
| NCBI Gene ID | LOC131020962 |
|---|---|
| GeneID | 131020962 |
| locus_tag | - |
| NCBI Name | LOC131020962 |
| 原始查询 | LOC131020962 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | UDP-glucosyltransferase 29-like |
| 产物 | UDP-glucosyltransferase 29-like |
| Arabidopsis | AT5G49690 (AT5G49690)UDP-Glycosyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835032] identity=33.2; qcov=1.06; evalue=4.47e-66; confidence=low |
| Rice | Os07g0672700- identity=41.6; qcov=1.08; evalue=5.37e-113; confidence=medium |
| GO | GO:0008194 (UDP-glycosyltransferase activity) |
| KEGG | - |
| Pfam | PF00201 (UDPGT); PF26168 (Glyco_transf_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020962 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057806000.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057806000.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057806000.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057806000.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057806000.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:55904427 |
AAT |
A |
2bp_deletion | frameshift_variant | 123 | A10,A11,A14,A18,A19,A22,A23,A24,A25,A3,A5,A9,B1,B101,B102,B108,B112,B113,B117,B119,B12,B124,B125,B129,B13,B130,B131,B132,B134,B135,B136,B137,B138,B139,B14,B15,B16,B17,B24,B26,B27,B29,B37,B4,B40,B42,B43,B44,B49,B52,B54,B55,B57,B59,B6,B61,B62,B63,B64,B65,B66,B67,B7,B70,B73,B78,B79,B83,B84,B85,B86,B87,B88,B94,B95,B99,C1,C10,C15,C2,C20,C22,C23,C24,C25,C30,C32,C33,C38,C39,C4,C40,C42,C45,C47,C48,C5,C54,C55,C58,C59,C6,C61,C62,C63,C64,C66,C68,C71,C72,C76,C78,C80,C83,C84,C9,D1,D10,D2,D4,D5,D7,D8 |
Chr4:55904484 |
TG |
T |
1bp_deletion | frameshift_variant | 5 | A3,B12,B137,C61,C78 |
Chr4:55904484 |
TG |
T |
1bp_deletion | CDS_variant | 5 | A3,B12,B137,C61,C78 |
Chr4:55904498 |
CCT |
C |
2bp_deletion | frameshift_variant | 1 | B63 |
Chr4:55904498 |
CCT |
C |
2bp_deletion | CDS_variant | 1 | B63 |
Chr4:55904521 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A3,B12,B137,C61,C78 |
Chr4:55904594 |
AC |
A |
1bp_deletion | frameshift_variant | 9 | A20,A4,A8,B107,B18,B68,C19,C21,C75 |
Chr4:55904610 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C72 |
Chr4:55904685 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B137,C61,C78 |
Chr4:55904719 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A10,C70,C75 |
Chr4:55904735 |
C |
CCT |
2bp_insertion | frameshift_variant | 8 | A20,A8,B107,B114,B2,B97,C21,C75 |
Chr4:55904769 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057806000.1PF26168
Glyco_transf_N 9-140 aa
PF00201
UDPGT 256-409 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806000.1 |
Pfam | PF26168 |
Glyco_transf_N | Domain | 9 | 140 | 1.8e-08 | 35.3 | Glycosyltransferase, N-terminal domain |
XP_057806000.1 |
Pfam | PF00201 |
UDPGT | Family | 256 | 409 | 2.6e-19 | 70.2 | UDP-glucoronosyl and UDP-glucosyl transferase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。