Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G004093`

染色体: Chr04 坐标: 55921115-55930003 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G004093`
名称	SmilChr04G004093
描述	ISWI chromatin-remodeling complex ATPase CHR11-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	55921115 - 55930003 / `+`

ID 对照

NCBI Gene ID	`LOC131020967`
GeneID	`131020967`
locus_tag	`-`
NCBI Name	`LOC131020967`
原始查询	`LOC131020967`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ISWI chromatin-remodeling complex ATPase CHR11-like
产物	ISWI chromatin-remodeling complex ATPase CHR11-like
Arabidopsis	`AT5G18620` (CHR17) chromatin remodeling factor17 [Source:NCBI gene (formerly Entrezgene);Acc:831980] identity=83.3; qcov=1.01; evalue=0; confidence=high
Rice	`Os01g0367900` - identity=84.3; qcov=0.96; evalue=0; confidence=high
GO	GO:0000785 (chromatin); GO:0003677 (DNA binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0016887 (ATP hydrolysis activity); GO:0031491 (nucleosome binding); GO:0034728 (nucleosome organization); GO:0042393 (histone binding); GO:0140658 (ATP-dependent chromatin remodeler activity)
KEGG	smil03082 (ATP-dependent chromatin remodeling - Salvia miltiorrhiza (redroot sage))
Pfam	PF00176 (SNF2-rel_dom); PF00271 (Helicase_C); PF04851 (ResIII); PF09110 (HAND); PF09111 (SLIDE)
InterPro	-
eggNOG	-
NR	GeneID:131020967

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057806007.1`
2	Chromosome	染色体	0.80000	`XP_057806007.1`
3	Nucleoplasm	核质	0.60000	`XP_057806007.1`
4	Nucleolar fibrillar center	Nucleolar fibrillar center	0.20000	`XP_057806007.1`
5	Centromere	着丝粒	0.00000	`XP_057806007.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:55921343`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C32,C47,C68
`Chr4:55921347`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B103,B80,C71
`Chr4:55921384`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B103,B80,C71
`Chr4:55921388`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A3,B12,B137,C61,C78
`Chr4:55922056`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D8
`Chr4:55922142`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B103,B80,C42,C71
`Chr4:55922146`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B53,C8
`Chr4:55925212`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C72
`Chr4:55926202`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	D10,D11
`Chr4:55926265`	`GTC`	`G`	2bp_deletion	frameshift_variant	1	B70
`Chr4:55926265`	`GTC`	`G`	2bp_deletion	CDS_variant	1	B70
`Chr4:55926415`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806007.1

1063 aa

532

1063

ResIII

SNF2-rel_dom

Helicase_C

HAND

SLIDE

PF04851 ResIII 185-345 aa PF00176 SNF2-rel_dom 189-466 aa PF00271 Helicase_C 488-601 aa PF09110 HAND 750-837 aa PF09111 SLIDE 894-1004 aa

XP_057806008.1

1062 aa

531

1062

ResIII

SNF2-rel_dom

Helicase_C

HAND

SLIDE

PF04851 ResIII 185-345 aa PF00176 SNF2-rel_dom 189-466 aa PF00271 Helicase_C 488-601 aa PF09110 HAND 750-834 aa PF09111 SLIDE 893-1003 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806007.1`	Pfam	`PF04851`	ResIII	Family	185	345	2.6e-10	41.2	Type III restriction enzyme, res subunit
`XP_057806007.1`	Pfam	`PF00176`	SNF2-rel_dom	Domain	189	466	4.4e-100	335.2	SNF2-related domain
`XP_057806007.1`	Pfam	`PF00271`	Helicase_C	Domain	488	601	2.4e-25	89.6	Helicase conserved C-terminal domain
`XP_057806007.1`	Pfam	`PF09110`	HAND	Domain	750	837	2.9e-06	28.8	HAND
`XP_057806007.1`	Pfam	`PF09111`	SLIDE	Domain	894	1004	9e-43	145.7	SLIDE
`XP_057806008.1`	Pfam	`PF04851`	ResIII	Family	185	345	2.6e-10	41.1	Type III restriction enzyme, res subunit
`XP_057806008.1`	Pfam	`PF00176`	SNF2-rel_dom	Domain	189	466	4.4e-100	335.2	SNF2-related domain
`XP_057806008.1`	Pfam	`PF00271`	Helicase_C	Domain	488	601	2.4e-25	89.6	Helicase conserved C-terminal domain
`XP_057806008.1`	Pfam	`PF09110`	HAND	Domain	750	834	6.5e-06	27.7	HAND
`XP_057806008.1`	Pfam	`PF09111`	SLIDE	Domain	893	1003	9e-43	145.7	SLIDE

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057950025.1
TACTCAAACAGCACGTCGCTTTTCTTCTCTTTATTTATTTCAATTTATTTTTCCTTTTTTTCGATCGATCACTGCATTTTTCCTCTTCGAATCGGCAGAAAACCAGCGCCAATGGCGAAATCGTCGCGAGCTGTCGACTCATCCGACGACTACATGTCGAATTCATCTTCGGAGGAAGAGGAGGTCAGGGATCAACCCGACGACGTGGACGACGAGGAGCTGGAAACCGTCGCGGGGTCCGCCGACGAGGAGGCGGCGGA...

XM_057950024.1
CTCAAACAGCACGTCGCTTTTCTTCTCTTTATTTATTTCAATTTATTTTTCCTTTTTTTCGATCGATCACTGCATTTTTCCTCTTCGAATCGGCAGAAAACCAGCGCCAATGGCGAAATCGTCGCGAGCTGTCGACTCATCCGACGACTACATGTCGAATTCATCTTCGGAGGAAGAGGAGGTCAGGGATCAACCCGACGACGTGGACGACGAGGAGCTGGAAACCGTCGCGGGGTCCGCCGACGAGGAGGCGGCGGAGG...

CDS

2 records

下载 CDS FASTA

LOC131020967
ATGGCGAAATCGTCGCGAGCTGTCGACTCATCCGACGACTACATGTCGAATTCATCTTCGGAGGAAGAGGAGGTCAGGGATCAACCCGACGACGTGGACGACGAGGAGCTGGAAACCGTCGCGGGGTCCGCCGACGAGGAGGCGGCGGAGGAGATGACCGGAGTCTCCGGAGACGATGAGGATGACAATGAGGTTGATGATGCTGTCAAAGCTGAAGTATCCAAGCGTGAAAAAGCCAGGCTCAAGGAAATGCAGAGGAT...

Protein

2 records

下载 Protein FASTA

XP_057806007.1
MAKSSRAVDSSDDYMSNSSSEEEEVRDQPDDVDDEELETVAGSADEEAAEEMTGVSGDDEDDNEVDDAVKAEVSKREKARLKEMQRMKNQKIQEILDAQNAAIDADMNKKGKGRLNYLLQQTELFAHFAKGSQSASQKKAKGRGRHASKLTEEEEDAEYLKEEDDVISGAGGTRLVAQPSCIQGKMRDYQLAGLNWLIRIYENGINGILADEMGLGKTLQTISLLGYLHEFRGIMGPHMVVAPKSTLGNWMNEIKRFCPI...

XP_057806008.1
MAKSSRAVDSSDDYMSNSSSEEEEVRDQPDDVDDEELETVAGSADEEAAEEMTGVSGDDEDDNEVDDAVKAEVSKREKARLKEMQRMKNQKIQEILDAQNAAIDADMNKKGKGRLNYLLQQTELFAHFAKGSQSASQKKAKGRGRHASKLTEEEEDAEYLKEEDDVISGAGGTRLVAQPSCIQGKMRDYQLAGLNWLIRIYENGINGILADEMGLGKTLQTISLLGYLHEFRGIMGPHMVVAPKSTLGNWMNEIKRFCPI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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