Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G004100`

染色体: Chr04 坐标: 55966158-55971047 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G004100`
名称	SmilChr04G004100
描述	zinc finger CCCH domain-containing protein 34-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	55966158 - 55971047 / `-`

ID 对照

NCBI Gene ID	`LOC131020974`
GeneID	`131020974`
locus_tag	`-`
NCBI Name	`LOC131020974`
原始查询	`LOC131020974`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	zinc finger CCCH domain-containing protein 34-like
产物	zinc finger CCCH domain-containing protein 34-like
Arabidopsis	`AT2G47850` (AT2G47850) Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:NCBI gene (formerly Entrezgene);Acc:819397] identity=53.7; qcov=0.9; evalue=1.92e-158; confidence=high
Rice	`Os01g0258700` (OsC3H6) - identity=52.3; qcov=0.913; evalue=6.61e-152; confidence=high
GO	GO:0003729 (mRNA binding); GO:0046872 (metal ion binding)
KEGG	-
Pfam	PF00642 (zf-CCCH); PF14608 (zf-CCCH_2)
InterPro	-
eggNOG	-
NR	GeneID:131020974

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057806014.1`
2	Cytoplasm	细胞质	0.40000	`XP_057806014.1`
3	Cytosol	细胞质基质	0.20000	`XP_057806014.1`
4	Chromosome	染色体	0.00000	`XP_057806014.1`
5	Centromere	着丝粒	0.00000	`XP_057806014.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:55966779`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr4:55966785`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:55966823`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B109,B74,B84,C59,C81
`Chr4:55967019`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr4:55967334`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:55967387`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B48
`Chr4:55967466`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr4:55968403`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B2,C13
`Chr4:55968417`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A7,B28,B36,B80,C70
`Chr4:55968419`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:55968594`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A18,C13
`Chr4:55968601`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B1,B40,B7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806014.1

492 aa

246

492

zf-CCCH

zf-CCCH_2

zf-CCCH

zf-CCCH_2

zf-CCCH

zf-CCCH_2

zf-CCCH

zf-CCCH_2

zf-CCCH

zf-CCCH_2

PF00642 zf-CCCH 51-76 aa PF14608 zf-CCCH_2 54-75 aa PF00642 zf-CCCH 98-122 aa PF14608 zf-CCCH_2 101-121 aa PF00642 zf-CCCH 143-168 aa PF14608 zf-CCCH_2 147-167 aa PF00642 zf-CCCH 313-339 aa PF14608 zf-CCCH_2 318-338 aa PF00642 zf-CCCH 360-385 aa PF14608 zf-CCCH_2 363-384 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806014.1`	Pfam	`PF00642`	zf-CCCH	Family	51	76	1.6e-47	159.3	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
`XP_057806014.1`	Pfam	`PF14608`	zf-CCCH_2	Domain	54	75	1.7e-18	67.0	RNA-binding, Nab2-type zinc finger
`XP_057806014.1`	Pfam	`PF00642`	zf-CCCH	Family	98	122	1.6e-47	159.3	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
`XP_057806014.1`	Pfam	`PF14608`	zf-CCCH_2	Domain	101	121	1.7e-18	67.0	RNA-binding, Nab2-type zinc finger
`XP_057806014.1`	Pfam	`PF00642`	zf-CCCH	Family	143	168	1.6e-47	159.3	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
`XP_057806014.1`	Pfam	`PF14608`	zf-CCCH_2	Domain	147	167	1.7e-18	67.0	RNA-binding, Nab2-type zinc finger
`XP_057806014.1`	Pfam	`PF00642`	zf-CCCH	Family	313	339	1.6e-47	159.3	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
`XP_057806014.1`	Pfam	`PF14608`	zf-CCCH_2	Domain	318	338	1.7e-18	67.0	RNA-binding, Nab2-type zinc finger
`XP_057806014.1`	Pfam	`PF00642`	zf-CCCH	Family	360	385	1.6e-47	159.3	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
`XP_057806014.1`	Pfam	`PF14608`	zf-CCCH_2	Domain	363	384	1.7e-18	67.0	RNA-binding, Nab2-type zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057950031.1
GGGAAAATAAACCATTCTCTCTCTCTTCATTCTCTCACTCTCTCTCTAAAACCACCAAACCCCCTCTTGATCAAACCACCTCCGTTTCACACAATCAGACACACAGCTTAGTTTTTGGGTGTATAGTATATATATCGTATGCATACGACTACTGGTGTATTGCCTCGGTAAATATCATTATACAGAAGCAACTACGTGTATATATTTAGAGAGAGAGAGGGGGAGGGTAAGAGAGAGAGAGGGAGTGTGTGTGTGTGTGT...

CDS

1 records

下载 CDS FASTA

LOC131020974
ATGGAGAGGTATAGCGCGACGCAGGCAATGGAGCCGAGGTCGGTGGATCCGGCGGCGGAATGGACGGGGCAGGGAGGCGAAACCGAGCTGGAAGGGCCTATGTGGCGACTGCACCTCGGCGAGGGGCCCGAATCTTACCCCGAGAGGCCCGATGAGCCCGACTGTATCTATTACTTGAGAACTGGATTCTGTGGCTATGGCAATCGGTGCCGGTTCAATCATCCCCGCGATCGTGGTGCGGCAATGGGAGCTCTAAGGGC...

Protein

1 records

下载 Protein FASTA

XP_057806014.1
MERYSATQAMEPRSVDPAAEWTGQGGETELEGPMWRLHLGEGPESYPERPDEPDCIYYLRTGFCGYGNRCRFNHPRDRGAAMGALRATGGEYPERHGEPVCQYYMRTGMCKFGASCKYHHPKHGAGSSSPITLNFYGYPLRQGEKECSYYIKTGQCKFGVTCKFHHPQPAGIQMPAPGAGPGPLAGPAAMPTPTLYPTVQSPSVQSSQQYGILHGNWPVSRPTMLPGSYVPGSYGPMLLAPGVVPVPGWNPYSAQVSHGA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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